PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011072389.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 308aa    MW: 33557.2 Da    PI: 8.3706
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011072389.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.20.000172282661255
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  XP_011072389.1 228 RKEKLGDRITALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 266
                     6678889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.846216265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-10226278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.94E-6226270No hitNo description
Gene3DG3DSA:4.10.280.107.7E-8230273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MMAAGNPNWW SMINGMHPQS HHQFVYASNS PAQLSSPPDN HQDFPVRSWS QLLLGGVGGG  60
GGGEEEEEEE RYGTGAGAGL FQQQKKLENW EDQVLNLNPS FARTPVVDVK QEDIAHKSSS  120
TCQISYAHVD HHDQFHQPAP PNRPNTNSWP APPHQQVVMP HVSSPTSCIT SLSTNILNFS  180
GPKSASSSQR KHNQDHSADD QCNSTGTGGV SKKARVQQSS AQPALKVRKE KLGDRITALH  240
QLVSPFGKTD TASVLSEAIG YIRFLQGQIE ALSSPYMRNA SGSTGHHQHS VNKFKKGIVC  300
FPKRLVSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011072389.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0725593e-46KJ072559.1 Sesamum indicum clone TilSSR_43760 microsatellite Sesame_43760 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020548670.10.0transcription factor bHLH68 isoform X8
TrEMBLA0A2G9H8741e-108A0A2G9H874_9LAMI; Uncharacterized protein
STRINGMigut.I00932.1.p2e-78(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.13e-33bHLH family protein