PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011072388.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | bHLH | ||||||||
Protein Properties | Length: 364aa MW: 39460.5 Da PI: 6.6931 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.8 | 0.00021 | 228 | 266 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq XP_011072388.1 228 RKEKLGDRITALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 266 6678889999999999998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.846 | 216 | 265 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-10 | 226 | 278 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.09E-6 | 226 | 270 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.9E-8 | 230 | 273 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MMAAGNPNWW SMINGMHPQS HHQFVYASNS PAQLSSPPDN HQDFPVRSWS QLLLGGVGGG 60 GGGEEEEEEE RYGTGAGAGL FQQQKKLENW EDQVLNLNPS FARTPVVDVK QEDIAHKSSS 120 TCQISYAHVD HHDQFHQPAP PNRPNTNSWP APPHQQVVMP HVSSPTSCIT SLSTNILNFS 180 GPKSASSSQR KHNQDHSADD QCNSTGTGGV SKKARVQQSS AQPALKVRKE KLGDRITALH 240 QLVSPFGKTD TASVLSEAIG YIRFLQGQIE ALSSPYMRNA SGSTGHHQHS VQERNCLFPE 300 ETGQFLNDIG MERGAPKQES EGRSGALMDL RSRGLCLVPI SCTQHVGNEN GADYWAPAAL 360 GGGF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011072388.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ072559 | 3e-46 | KJ072559.1 Sesamum indicum clone TilSSR_43760 microsatellite Sesame_43760 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011072388.1 | 0.0 | transcription factor bHLH68 isoform X2 | ||||
TrEMBL | A0A2G9H874 | 1e-153 | A0A2G9H874_9LAMI; Uncharacterized protein | ||||
STRING | Migut.I00932.1.p | 1e-116 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1519 | 22 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29100.1 | 8e-62 | bHLH family protein |