PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011072112.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family B3
Protein Properties Length: 339aa    MW: 38364.5 Da    PI: 7.6542
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011072112.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.74.4e-1313831790
                    E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
                    vlp +f+++  +k ++   ++l++++g ++ v+l +r+++g ++l++ WkeF++a+ L+  D+++Fk++g+sef
  XP_011072112.1 13 VLPTTFVKNLREKLAG--SVVLKTPKGGEYVVEL-VRNGDGVVLLKGKWKEFADAHCLQKDDTLIFKYHGNSEF 83
                    89*****766655444..6***************.5777777999999*********************99888 PP
2B344.23.5e-14261334583
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                     +  s+v ++  lv++ k a++ g+k +++ +l++ d   +sW vk+    +  ++ lt+GWk Fv +ngL+e D+++F 
  XP_011072112.1 261 MRASYVYARFFLVFSLKWARSQGLKGKQELELRMDD---KSWYVKF--YDRETSVGLTRGWKTFVLDNGLEEDDVCLFN 334
                     67899*****************88866776777777...*******..77777999**********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.155191IPR003340B3 DNA binding domain
SMARTSM010192.9E-6391IPR003340B3 DNA binding domain
SuperFamilySSF1019361.47E-141089IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-141089IPR015300DNA-binding pseudobarrel domain
CDDcd100175.26E-121389No hitNo description
PfamPF023622.9E-101384IPR003340B3 DNA binding domain
PROSITE profilePS5086311.293257339IPR003340B3 DNA binding domain
SMARTSM010190.0011257339IPR003340B3 DNA binding domain
SuperFamilySSF1019364.71E-14259336IPR015300DNA-binding pseudobarrel domain
CDDcd100174.54E-12260333No hitNo description
Gene3DG3DSA:2.40.330.103.5E-15260335IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-11261335IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MQKTTVDQPT KEVLPTTFVK NLREKLAGSV VLKTPKGGEY VVELVRNGDG VVLLKGKWKE  60
FADAHCLQKD DTLIFKYHGN SEFDATMFDG KTGCEKVCSY FVRKEEDLVE TPHNAKESVS  120
EENTNKSKCE DDCVLISPHD NKNSSTISGS VGGRTTRKRS GKNTVCEDDI DFVSSRKGKN  180
IMRAMRGSIS GSIARKQLAT KLFEGGSCDI SSVEVKQNFI REDCENDIQQ PKRRVVTDIE  240
KQRTLERAFE ELNDNGLLIP MRASYVYARF FLVFSLKWAR SQGLKGKQEL ELRMDDKSWY  300
VKFYDRETSV GLTRGWKTFV LDNGLEEDDV CLFNIVPGS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011072112.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020547902.10.0B3 domain-containing protein REM16-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13043817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-32B3 family protein