PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011071748.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bHLH

Protein Properties

Length: 286aa MW: 30680.2 Da PI: 5.7822

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011071748.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.7	4.3e-08	153	216	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC............TTS-...STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkas.........kapskK...lsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + ++ K Ka +L + ++YI+sLq XP_011071748.1 153 SHSLAERARREKISERMKILQDLVPGCNkvfsflpsfLDSCAKflvIGKALVLDEIINYIQSLQ 216 8***********************888****66666652258*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.53E-14	147	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.13E-8	147	220	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.7E-15	149	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.646	149	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.5E-6	153	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.6E-8	155	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MDPPLVNEAS FIAAANPSSY SLAGLLSFPT GGGGGGLRMG SLGLVGGDGS LEESTGTEQS 60 GSRGGAKRRR DAANSFDDSS SKLVSTSSAN QDLNESDPKH MKSSGSRDEN GGSKTETEEI 120 SGTSVKPVEE KSTAEPPKDY IHVRARRGQA TDSHSLAERA RREKISERMK ILQDLVPGCN 180 KVFSFLPSFL DSCAKFLVIG KALVLDEIIN YIQSLQRQVE FLSMKLEAVN SRLSPTIEGF 240 PSKDLAAPTF DPNGMLYGSQ PPREYARGSQ AEWLHMQIGS GFERAT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011071748.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071748.1	0.0	transcription factor bHLH79-like isoform X1
Swissprot	Q9LV17	2e-72	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A0H3YBS3	1e-139	A0A0H3YBS3_SALMI; Basic helix-loop-helix transcription factor
STRING	Migut.I00100.1.p	1e-119	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1287	24	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59640.1	3e-71	BIG PETAL P

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]