PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011071735.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | LBD | ||||||||
Protein Properties | Length: 293aa MW: 33148.1 Da PI: 4.8416 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 114.7 | 6e-36 | 10 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rr+C+++C lap fpa+qpk f nvh+lFG++++++llk+l+++++++am+s+ ++A +r + PvyG++ i++l+ q++ +++el+ XP_011071735.1 10 ACAACKYQRRRCTPECLLAPFFPADQPKMFLNVHRLFGVKHIQNLLKELDPDQKPMAMKSIKFHAAMRDKYPVYGCLVEIQQLTYQIQLAEEELQ 104 7*********************************************************************************************9 PP DUF260 96 llkee 100 ++ ++ XP_011071735.1 105 AVLQQ 109 98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.037 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.9E-34 | 10 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0009786 | Biological Process | regulation of asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MTLKSGTGQA CAACKYQRRR CTPECLLAPF FPADQPKMFL NVHRLFGVKH IQNLLKELDP 60 DQKPMAMKSI KFHAAMRDKY PVYGCLVEIQ QLTYQIQLAE EELQAVLQQL AYYRQQQHQQ 120 QDMSPTDDYL SQLQLGMAPP GNAGMPVVHQ DNPPQQYNVV TAVPVAPHAS YSNNANANYN 180 TNLDSKENND VDSLWFQQAY SYNSNNTNPN SMVIQSQLAT SEPMPIPQEA PQDYNEMHPF 240 FDNIDDRQSY IGSKEPYESS LESPLKDSRQ TVEQIAENEL KSAAACFSLT SVN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-26 | 6 | 113 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-26 | 6 | 113 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011071735.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071735.1 | 0.0 | LOB domain-containing protein 27 | ||||
TrEMBL | A0A2G9FXT8 | 1e-136 | A0A2G9FXT8_9LAMI; Uncharacterized protein | ||||
STRING | XP_009588931.1 | 1e-116 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1449 | 23 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 5e-38 | LOB domain-containing protein 27 |