PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011071698.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

M-type_MADS

Protein Properties

Length: 357aa MW: 41002.5 Da PI: 6.5118

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011071698.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	65.3	6.1e-21	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 r e+ s rqvt+ kRr+gilKKA+E+SvLCd+++ +++fs+tgk XP_011071698.1 10 RLESLSSRQVTYGKRRAGILKKAQEISVLCDIDIILLMFSPTGK 53 678999************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	23.619	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	5.9E-28	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.27E-24	2	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.0E-17	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.3E-17	12	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.0E-17	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.0E-17	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MGRVKLKIQR LESLSSRQVT YGKRRAGILK KAQEISVLCD IDIILLMFSP TGKPSIFRGQ 60 RSNLDEMIAK YAQLTPKERA KRRLESLETL KRNFKKLDQD VDIEEFLDTS TPSTEEMHSR 120 VNMMQAQLSE VRKRLSWWTN PDKIEDIEHL NQMENSLRES LNRTHMHKQE KFLKDPLISF 180 DCTSQFQNGM HLPIVTTSDQ DCQTQSWLPG GESQHMILPN EPHFLASRDI DCSRDASFPT 240 CSGYFGDMKE QDLDNPRQMK NERQGGISVE DYACSAPLRL PLVEQYPYHS FANLSFPDLL 300 EPGRETNFQP STMDYQITGN FELPRSVYNS LPHSLVPTVG SCVISMLNGH SYPQPPN

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MGRVKLKIQR LESLSSRQVT YGKRRAGILK KAQEISVLCD IDIILLMFSP TGKPSIFRGQ  60
RSNLDEMIAK YAQLTPKERA KRRLESLETL KRNFKKLDQD VDIEEFLDTS TPSTEEMHSR  120
VNMMQAQLSE VRKRLSWWTN PDKIEDIEHL NQMENSLRES LNRTHMHKQE KFLKDPLISF  180
DCTSQFQNGM HLPIVTTSDQ DCQTQSWLPG GESQHMILPN EPHFLASRDI DCSRDASFPT  240
CSGYFGDMKE QDLDNPRQMK NERQGGISVE DYACSAPLRL PLVEQYPYHS FANLSFPDLL  300
EPGRETNFQP STMDYQITGN FELPRSVYNS LPHSLVPTVG SCVISMLNGH SYPQPPN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	7e-15	1	92	1	90	MEF2 CHIMERA
6byy_B	7e-15	1	92	1	90	MEF2 CHIMERA
6byy_C	7e-15	1	92	1	90	MEF2 CHIMERA
6byy_D	7e-15	1	92	1	90	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011071698.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071694.1	0.0	agamous-like MADS-box protein AGL65 isoform X1
Swissprot	Q7X9I0	4e-80	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A022R5G8	0.0	A0A022R5G8_ERYGU; Uncharacterized protein
TrEMBL	A0A022R6G6	0.0	A0A022R6G6_ERYGU; Uncharacterized protein
STRING	Migut.I00190.1.p	0.0	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	2e-82	AGAMOUS-like 65

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]