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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011071696.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 364aa MW: 41830.5 Da PI: 6.5091 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.3 | 6.3e-21 | 18 | 61 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 r e+ s rqvt+ kRr+gilKKA+E+SvLCd+++ +++fs+tgk XP_011071696.1 18 RLESLSSRQVTYGKRRAGILKKAQEISVLCDIDIILLMFSPTGK 61 678999************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.9E-28 | 9 | 68 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.619 | 9 | 69 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.31E-24 | 10 | 103 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-17 | 11 | 31 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-17 | 20 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-17 | 31 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-17 | 46 | 67 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MSFDCICRMG RVKLKIQRLE SLSSRQVTYG KRRAGILKKA QEISVLCDID IILLMFSPTG 60 KPSIFRGQRS NLDEMIAKYA QLTPKERAKR RLESLETLKR NFKKLDQDVD IEEFLDTSTP 120 STEEMHSRVN MMQAQLSEVR KRLSWWTNPD KIEDIEHLNQ MENSLRESLN RTHMHKEKFL 180 KDPLISFDCT SQFQNGMHLP IVTTSDQDCQ TQSWLPGGES QHMILPNEPH FLASRDIDCS 240 RDASFPTCSG YFGDMKEQDL DNPRQMKNER QGGISVEDYA CSAPLRLPLV EQYPYHSFAN 300 LSFPDLLEPG RETNFQPSTM DYQITGNFEL PRSVYNSLPH SLVPTVGSCV ISMLNGHSYP 360 QPPN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-14 | 9 | 100 | 1 | 90 | MEF2 CHIMERA |
6byy_B | 1e-14 | 9 | 100 | 1 | 90 | MEF2 CHIMERA |
6byy_C | 1e-14 | 9 | 100 | 1 | 90 | MEF2 CHIMERA |
6byy_D | 1e-14 | 9 | 100 | 1 | 90 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011071696.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071696.1 | 0.0 | agamous-like MADS-box protein AGL65 isoform X2 | ||||
Swissprot | Q7X9I0 | 2e-81 | AGL65_ARATH; Agamous-like MADS-box protein AGL65 | ||||
TrEMBL | A0A022R5G8 | 0.0 | A0A022R5G8_ERYGU; Uncharacterized protein | ||||
STRING | Migut.I00190.1.p | 0.0 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18750.1 | 7e-84 | AGAMOUS-like 65 |
Publications ? help Back to Top | |||
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