PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011071688.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

NAC

Protein Properties

Length: 355aa MW: 39916 Da PI: 5.1656

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011071688.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.6	2.5e-53	16	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL +kv + ++++ +i evd++kvePw+Lp ++k +ekewyfF+ rdkky+tg r+nrat++gyWkatgkdke+++ XP_011071688.1 16 LPPGFRFHPTDEELITHYLSRKVLDCSFSA-VAIGEVDMNKVEPWELPWRAKLGEKEWYFFCVRDKKYPTGLRTNRATAAGYWKATGKDKEIFR- 108 79***********************999.67***********888999************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++lvg+kktLvfykgrap+gek++Wv heyr+ XP_011071688.1 109 GKTLVGMKKTLVFYKGRAPRGEKSNWVCHEYRM 141 999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.15E-60	9	166	IPR003441	NAC domain
PROSITE profile	PS51005	56.128	16	166	IPR003441	NAC domain
Pfam	PF02365	8.5E-28	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MENNDGAMKM DDQMELPPGF RFHPTDEELI THYLSRKVLD CSFSAVAIGE VDMNKVEPWE 60 LPWRAKLGEK EWYFFCVRDK KYPTGLRTNR ATAAGYWKAT GKDKEIFRGK TLVGMKKTLV 120 FYKGRAPRGE KSNWVCHEYR MEGKFSIENL PKSARNDWVI SRVFQKTSGG KKVHISGLVR 180 MNSEENIPPN STLPPLLDPS PYTKPVELEL ELDVDLDLEP ESGHVHCFSN TITASASLKI 240 QDDFILPPSS NPLDSFPPPS SFSWGQLPPA QPGISFQFPG PVPLTDPSII RTFLANYGQN 300 TNPQGFRKDG GDIVSVSQET ENSSVVSNVE MGKKTFDDQE EAGIGNQDLD CIWNY

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MENNDGAMKM DDQMELPPGF RFHPTDEELI THYLSRKVLD CSFSAVAIGE VDMNKVEPWE  60
LPWRAKLGEK EWYFFCVRDK KYPTGLRTNR ATAAGYWKAT GKDKEIFRGK TLVGMKKTLV  120
FYKGRAPRGE KSNWVCHEYR MEGKFSIENL PKSARNDWVI SRVFQKTSGG KKVHISGLVR  180
MNSEENIPPN STLPPLLDPS PYTKPVELEL ELDVDLDLEP ESGHVHCFSN TITASASLKI  240
QDDFILPPSS NPLDSFPPPS SFSWGQLPPA QPGISFQFPG PVPLTDPSII RTFLANYGQN  300
TNPQGFRKDG GDIVSVSQET ENSSVVSNVE MGKKTFDDQE EAGIGNQDLD CIWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	6e-52	13	172	17	174	NAC domain-containing protein 19
3swm_B	6e-52	13	172	17	174	NAC domain-containing protein 19
3swm_C	6e-52	13	172	17	174	NAC domain-containing protein 19
3swm_D	6e-52	13	172	17	174	NAC domain-containing protein 19
3swp_A	6e-52	13	172	17	174	NAC domain-containing protein 19
3swp_B	6e-52	13	172	17	174	NAC domain-containing protein 19
3swp_C	6e-52	13	172	17	174	NAC domain-containing protein 19
3swp_D	6e-52	13	172	17	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011071688.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071688.1	0.0	NAC domain-containing protein 79
Refseq	XP_011071689.1	0.0	NAC domain-containing protein 79
Refseq	XP_020547905.1	0.0	NAC domain-containing protein 79
Swissprot	Q9FLJ2	1e-117	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2Z7BJ03	1e-147	A0A2Z7BJ03_9LAMI; Uncharacterized protein
STRING	XP_009802067.1	1e-144	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-119	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]