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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011071652.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB | ||||||||
Protein Properties | Length: 344aa MW: 38476.7 Da PI: 4.7249 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.7 | 9.7e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l++++k G g+W++ ++ g+ R++k+c++rw +yl XP_011071652.1 14 KGKWTAEEDEKLINYIKANGDGSWRSLPKNAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 58.2 | 1.9e-18 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+e +v+++k lG++ W++Ia++++ gRt++++k++w+++l XP_011071652.1 67 RGNFTADEEETIVKLHKSLGNR-WSLIASYLP-GRTDNEIKNYWNSHL 112 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.312 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.5E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.96E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.671 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.07E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0051555 | Biological Process | flavonol biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MGKTPCCEKV GLKKGKWTAE EDEKLINYIK ANGDGSWRSL PKNAGLLRCG KSCRLRWINY 60 LREDVKRGNF TADEEETIVK LHKSLGNRWS LIASYLPGRT DNEIKNYWNS HLSRKIYRFR 120 SIGESILTSA DIIKMASTGN KRAGRVSRAV AKKYNNNSST TASRTGNSEN SFTCMVNEQA 180 TAQETSSSDN LPVPSVGAAR MAGENDLDPL DRCESYEQKS ANVDGLSCAE GRPGAFMASA 240 NEVGAEEMLG PWKEVDEDIL MHLKDFLAET DQSENILINE GRQDVLMNTE RDCGGWSSNS 300 ETQDLYPCSS PVASYFNDEV VWDHEDAGEE ILNLWNAEDI WNWL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-26 | 12 | 116 | 5 | 108 | B-MYB |
1h8a_C | 2e-26 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00598 | PBM | Transfer from AT5G49330 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011071652.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT224453 | 8e-44 | KT224453.1 Erythranthe lewisii light areas 1 (LAR1) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071652.1 | 0.0 | transcription factor MYB14 | ||||
TrEMBL | A0A2G9GJ78 | 1e-145 | A0A2G9GJ78_9LAMI; Transcription factor, Myb superfamily | ||||
STRING | Migut.N00057.1.p | 1e-101 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 3e-72 | myb domain protein 111 |