PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011071650.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRAS
Protein Properties Length: 581aa    MW: 65493.7 Da    PI: 6.2079
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011071650.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS275.22e-842045741374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal..ppsetseknsseelaalklfsevsPilkf 93 
                     lv+ Ll  Ae +++++ e+a+++L+    ++s++g+p+qRl++yft AL +++ r+  +++ +   +   ++ ++ +    ++  f++  P+ ++
  XP_011071650.1 204 LVQNLLLSAEKLDEKKYEQARKILEGCDRMSSSTGTPIQRLVFYFTGALYEKIDRENGTVSTKGlgKQILDPLEDLQPDQRFQISFHKNHPLCQI 298
                     57889999***********************************************555555444233333333445555566666********** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                     +++ a qa+ + v++++++H+iD+di  G+Q   L+qaL  R+e p  +l iT+vg    +sk  +e+tg+rL  fAe+l+++f+f+++++ ++ 
  XP_011071650.1 299 TQFSAMQAVIDHVAEATKIHVIDLDIRSGVQSTILMQALVGRQEHPVqHLTITAVGT---KSKALIEQTGKRLMAFAESLKLKFSFHIVMVADIL 390
                     ******************************************966555*********...58999****************************** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     +l+ + ++++ +Ea+aV  +++l ++ ++  +le+    +++++k+++P v++vve ++++ns++F+ rf+eal +y a+fdsl++ + +++ +r
  XP_011071650.1 391 ELNENLFELNADEAVAVYAAFALTYMIAQADQLEH----IMRVIKNIKPCVMIVVEIDTNCNSPTFVWRFVEALFFYGAFFDSLAECMKNDETNR 481
                     ***************************88777777....******************************************************** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +  E  +++ +i+n+va+eg err r   l+ Wr+ ++++G+ +++ls +   qa+ll + ++     ++  + ++l++gWk+ pL ++SaW+
  XP_011071650.1 482 RHAESTCFRSSIRNIVAAEGGERRVRLVDLSVWRAFFTRFGLVELELSMSSLYQAHLLRQSFPcHSSCTLGMNGKCLTIGWKGTPLCTLSAWK 574
                     ***************************************************************9999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.296178553IPR005202Transcription factor GRAS
PfamPF035147.0E-82204574IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MFTAKIFDSR GVPNESSVSS GTYNEEAKKS SNSFGVEGWE DTHIDTSGDA AELGHSLSEV  60
HRQLRDYKEF GNLDDLYLDV VSPPLQSCND NEIRMILGIG SQNPELIDAK QKGSYVLPMR  120
SFELLRRHGI KRSRLEGQIC YTVCQTQSTY TQGSRMSTEN IIELAAENFV QPMSKTKEIS  180
VVSHPYPSSI TLDRSDDNLK AVQLVQNLLL SAEKLDEKKY EQARKILEGC DRMSSSTGTP  240
IQRLVFYFTG ALYEKIDREN GTVSTKGLGK QILDPLEDLQ PDQRFQISFH KNHPLCQITQ  300
FSAMQAVIDH VAEATKIHVI DLDIRSGVQS TILMQALVGR QEHPVQHLTI TAVGTKSKAL  360
IEQTGKRLMA FAESLKLKFS FHIVMVADIL ELNENLFELN ADEAVAVYAA FALTYMIAQA  420
DQLEHIMRVI KNIKPCVMIV VEIDTNCNSP TFVWRFVEAL FFYGAFFDSL AECMKNDETN  480
RRHAESTCFR SSIRNIVAAE GGERRVRLVD LSVWRAFFTR FGLVELELSM SSLYQAHLLR  540
QSFPCHSSCT LGMNGKCLTI GWKGTPLCTL SAWKFQRDID E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-3921257326377Protein SCARECROW
5b3h_D1e-3921257326377Protein SCARECROW
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011071650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071650.10.0DELLA protein RGL2-like
TrEMBLA0A2G9I0D40.0A0A2G9I0D4_9LAMI; Uncharacterized protein
STRINGMigut.G00048.1.p1e-169(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34272149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.15e-40RGA-like 2