PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011071636.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family TCP
Protein Properties Length: 349aa    MW: 36676.8 Da    PI: 9.902
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011071636.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP72.61.2e-22731713089
             TCP  30 arfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg................................... 88 
                     + +F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s +                                   
  XP_011071636.1  73 RSVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNMSLRSSGSSMSLPsqlrstffspnytvpqrrgifpgiglspetssttl 167
                     78***************************************999766666777665555566666777777778787777777776543333333 PP

             TCP  89 ...k 89 
                        +
  XP_011071636.1 168 lnfQ 171
                     3331 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513699.78272105IPR017887Transcription factor TCP subgroup
PfamPF036343.5E-2573216IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MIISTTTAAA PTSLSNYSRR KMTNPPAAPA SLPSPPPQPS HHQTLAPPLV RVPQLLPRVS  60
PSPPQNPPRS RRRSVFQLTR ELGHKSDGET IEWLLQQAEP AVIAATGTGT IPANFTSLNM  120
SLRSSGSSMS LPSQLRSTFF SPNYTVPQRR GIFPGIGLSP ETSSTTLLNF QAPNLNHSLM  180
QTKQEMRENS LDLTETTAED GLGRKRRAPD ELQQAAEHHQ IGSYLLQSST GAMPASHASI  240
PANFWMVGSS NNNQIQGTDP IWTFPSVNNT AAALYRAGMS SGLHFMNLPT SVTLLPGGSS  300
GGGGGGNGSG EGQWGMLAGL NPHRDGGAGG GGSESQASRS HGGGDDTTS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011071636.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071636.21e-166LOW QUALITY PROTEIN: transcription factor TCP14
SwissprotQ93Z008e-39TCP14_ARATH; Transcription factor TCP14
TrEMBLA0A4D9AVH51e-119A0A4D9AVH5_SALSN; Uncharacterized protein
STRINGXP_009794435.11e-116(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28822351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47620.19e-35TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14
Publications ? help Back to Top
  1. Steiner E, et al.
    The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin.
    Plant Physiol., 2016. 171(2): p. 1485-94
    [PMID:27208284]
  2. Yang L, et al.
    Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence.
    Cell Host Microbe, 2017. 21(2): p. 156-168
    [PMID:28132837]
  3. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]