PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011071617.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

WRKY

Protein Properties

Length: 631aa MW: 67840.1 Da PI: 6.0498

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011071617.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.1	2.3e-30	284	343	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+aed +++++tYeg+Hnh+ XP_011071617.1 284 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRCAEDMSILITTYEGTHNHP 343 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.2E-31	270	345	IPR003657	WRKY domain
SuperFamily	SSF118290	2.09E-27	276	345	IPR003657	WRKY domain
PROSITE profile	PS50811	28.461	279	345	IPR003657	WRKY domain
SMART	SM00774	1.4E-36	284	344	IPR003657	WRKY domain
Pfam	PF03106	7.8E-27	285	343	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 631 aa Download sequence Send to blast
METSLHKSDG GAGPVKEENK ASESSSMGDQ ESCGEEIVLQ VGAPKRGHDQ DEGVKAAASP 60 DQKTLLNSNK QGTLTITKMP ERSSPESESR LSSSSAKRQL VDDRIESTRA EMDEVMEENQ 120 RLKMYLDQIL KDYRTLQMQY RDVIEQEAKK APNVESTHRE HDTDGPDQLF ALSLGISSSS 180 SERVKDEPRK TLMNEDVLEG GDKEGTLTLG LDCKFEAPKK LLTEPSPNPS PENSLEDAKE 240 EAGETWQPKT IKSVRDGGDD EISQQNPAKR ARVSVRVRCD TPTMNDGCQW RKYGQKIAKG 300 NPCPRAYYRC TVAPSCPVRK QVQRCAEDMS ILITTYEGTH NHPLPISATA MASTTSAAAS 360 MLISGSSTSG TGLSSSSTIT ATTGSLNGLN FYMSDNSRSK PFYLPNSSIS SSPSFPTITL 420 DLTSSSSSSS SHSSTRLGNF PPRYSTTNLN FSSLESNPLP ISWSNGMLSY GPQPFNKNQN 480 ATNSLSFGPQ SHETLYQSFL QKAIPNPSQQ SLAPDTIAAA TKVITSDPSF QSALAAALTS 540 IIGSGGASLG NQNIGEKPTQ SSAMVSHEPF PILSSFPSTS NANKCATSFL NKSPSSTSSQ 600 PGGLMLLSPP FPFSNSKSKP NSPGDSRDHI V

Sequence ? help Back to Top

Protein Sequence Length: 631 aa Download sequence Send to blast

METSLHKSDG GAGPVKEENK ASESSSMGDQ ESCGEEIVLQ VGAPKRGHDQ DEGVKAAASP  60
DQKTLLNSNK QGTLTITKMP ERSSPESESR LSSSSAKRQL VDDRIESTRA EMDEVMEENQ  120
RLKMYLDQIL KDYRTLQMQY RDVIEQEAKK APNVESTHRE HDTDGPDQLF ALSLGISSSS  180
SERVKDEPRK TLMNEDVLEG GDKEGTLTLG LDCKFEAPKK LLTEPSPNPS PENSLEDAKE  240
EAGETWQPKT IKSVRDGGDD EISQQNPAKR ARVSVRVRCD TPTMNDGCQW RKYGQKIAKG  300
NPCPRAYYRC TVAPSCPVRK QVQRCAEDMS ILITTYEGTH NHPLPISATA MASTTSAAAS  360
MLISGSSTSG TGLSSSSTIT ATTGSLNGLN FYMSDNSRSK PFYLPNSSIS SSPSFPTITL  420
DLTSSSSSSS SHSSTRLGNF PPRYSTTNLN FSSLESNPLP ISWSNGMLSY GPQPFNKNQN  480
ATNSLSFGPQ SHETLYQSFL QKAIPNPSQQ SLAPDTIAAA TKVITSDPSF QSALAAALTS  540
IIGSGGASLG NQNIGEKPTQ SSAMVSHEPF PILSSFPSTS NANKCATSFL NKSPSSTSSQ  600
PGGLMLLSPP FPFSNSKSKP NSPGDSRDHI V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-20	271	345	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011071617.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071617.1	0.0	probable WRKY transcription factor 72
Swissprot	A0A3Q7GFB5	1e-145	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A2G9G0I2	0.0	A0A2G9G0I2_9LAMI; Uncharacterized protein
STRING	Migut.I00135.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1945	24	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	9e-72	WRKY DNA-binding protein 72

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]