PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011071269.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MIKC_MADS
Protein Properties Length: 477aa    MW: 54855.7 Da    PI: 9.275
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011071269.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.65.2e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  XP_011071269.1  9 KRIENKVNRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNKGKLYEFCS 59
                    79***********************************************96 PP
2SRF-TF978.1e-31244294151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                     krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+
  XP_011071269.1 244 KRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYST 294
                     79***********************************************96 PP
3K-box87.82.1e-29831721099
           K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     + +++++ +qe+ kLk+++e Lq++qRhllGe+L++L +keL qLe+ L++slk+iRs Kn+ +l+q+++l +ke++l e+n+aLr+kle
  XP_011071269.1  83 SPHNEQNKYQEYMKLKARVEVLQQSQRHLLGEELGQLGIKELDQLENVLDTSLKEIRSNKNHRMLNQLSDLHQKERNLLEINRALRSKLE 172
                     557899*********************************************************************************986 PP
4K-box107.61.5e-3532441014100
           K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      ++++ e++kLk++ie Lqr++Rh++GedL+s+s+k+Lq+LeqqL+++lk+iRs+Kn+ll+++i+elq+kek++qe+n +L kk++e
  XP_011071269.1 324 PANWTLEYSKLKARIELLQRNHRHYMGEDLKSISMKDLQNLEQQLDTALKNIRSRKNQLLYDSISELQRKEKAIQEQNSMLAKKIKE 410
                     679*********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.5E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.669161IPR002100Transcription factor, MADS-box
CDDcd002652.29E-41276No hitNo description
SuperFamilySSF554551.83E-33285IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-323859IPR002100Transcription factor, MADS-box
PfamPF014862.0E-2485171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.00987177IPR002487Transcription factor, K-box
PROSITE profilePS5006632.562236296IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-41236295IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-33237321IPR002100Transcription factor, MADS-box
CDDcd002651.25E-40237309No hitNo description
PROSITE patternPS003500238292IPR002100Transcription factor, MADS-box
PfamPF003192.1E-25245292IPR002100Transcription factor, MADS-box
PfamPF014861.4E-30322408IPR002487Transcription factor, K-box
PROSITE profilePS5129716.46324414IPR002487Transcription factor, K-box
Gene3DG3DSA:1.10.287.407.3E-4358419IPR015866Serine-tRNA synthetase, type1, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MGRGKVELKR IENKVNRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN KGKLYEFCSS  60
SSMGATLERY HRSSYGPLEA HQSPHNEQNK YQEYMKLKAR VEVLQQSQRH LLGEELGQLG  120
IKELDQLENV LDTSLKEIRS NKNHRMLNQL SDLHQKERNL LEINRALRSK LEGTSAALQS  180
TWQLQPELNV QYQQPPPVLP DVLFEPLQSN NIRYNSVEPN NVAGATQTPN MENNIMGRGK  240
VQLKRIENKI NRQVTFSKRR AGLLKKAHEI SVLCDAEVAL IVFSHKGKLF EYSTDSCMDR  300
ILEKYERYSF AERQLVANDQ PDSPANWTLE YSKLKARIEL LQRNHRHYMG EDLKSISMKD  360
LQNLEQQLDT ALKNIRSRKN QLLYDSISEL QRKEKAIQEQ NSMLAKKIKE KEKEMGQQTP  420
LPPPPPPPPQ FLMAPHHQLP CLNIGGGTYE EATEARRNEL DLTLDSLYSC HLGCFAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-221309181Myocyte-specific enhancer factor 2B
1tqe_Q3e-221309181Myocyte-specific enhancer factor 2B
1tqe_R3e-221309181Myocyte-specific enhancer factor 2B
1tqe_S3e-221309181Myocyte-specific enhancer factor 2B
6c9l_A3e-221309181Myocyte-specific enhancer factor 2B
6c9l_B3e-221309181Myocyte-specific enhancer factor 2B
6c9l_C3e-221309181Myocyte-specific enhancer factor 2B
6c9l_D3e-221309181Myocyte-specific enhancer factor 2B
6c9l_E3e-221309181Myocyte-specific enhancer factor 2B
6c9l_F3e-221309181Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00096ChIP-seqTransfer from AT1G69120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011071269.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6771860.0KM677186.1 Sesamum indicum cultivar Rajeswari APETALA 1 (AP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020547619.10.0floral homeotic protein APETALA 1
SwissprotQ6E6S71e-121AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A498HEX61e-177A0A498HEX6_MALDO; Uncharacterized protein
STRINGOGLUM03G34160.11e-133(Oryza glumipatula)
STRINGMigut.E00037.1.p1e-135(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-111MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]