PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011070895.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 336aa    MW: 36846.1 Da    PI: 5.432
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011070895.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH452e-144493255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    r +h+  E+rRR++iN++f+ Lrel+P +    ++K + a+ L ++++Y++ Lq
  XP_011070895.1 44 RSKHSVTEQRRRSKINERFQILRELIPRS----DQKRDTASFLLEVIQYVQFLQ 93
                    889*************************9....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-1740108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-2041112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.1014292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-124493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.86E-144497No hitNo description
SMARTSM003532.3E-104898IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MKSGKSHQEE EEEEDEEFGT KNHATPSNNN TKDGKNSDKA NAMRSKHSVT EQRRRSKINE  60
RFQILRELIP RSDQKRDTAS FLLEVIQYVQ FLQEKVQKYE GXISTVEFRA HKTDAMAEKQ  120
SLACSELCWS AANHEGXGSD PGSTFPGRFN ENNVATPAAM QQLSQQNPIE SDPVRDTSCQ  180
SIDPQTELPN KAMGLSMPLP ASLPVSNANE GAFSHSLPRP STSDAQSTEY PTTAHALNCQ  240
DELSIEGGTI SISSVYSEGL MNSLTQALQS TGVDLSQATI SVQINLGKRA NRGATPGIAI  300
AKDHDIPMPS RNQHVGPFQD PSNSDDLDPA RKRLKT
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011070895.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020547826.10.0LOW QUALITY PROTEIN: transcription factor BIM2
SwissprotQ9CAA45e-78BIM2_ARATH; Transcription factor BIM2
TrEMBLK4FP961e-142K4FP96_SALMI; BHLH1 protein
STRINGMigut.L01158.1.p1e-114(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44262337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-76BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]