PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011070888.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 527aa    MW: 56816.5 Da    PI: 6.1368
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011070888.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.4e-09347395355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  XP_011070888.1 347 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 395
                     58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.89E-17342413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.93E-11342399No hitNo description
PROSITE profilePS5088815.485344394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16345412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-6347395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10350400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MERAGNDANV EPAKGSENPV NFHEPNMSSD WHVHGNKITT VSIGLVTMCN SMAEPSACAS  60
APMIDSFGPP IWDQPINGQN SGYCNMNVQN VASTSSSLGA VKAGMGWTPN AMLSEGMILP  120
TVPGGVPQSL PHFPADSAFI ERAARFSCFN GGNFSEVVNH FPAPHPLNPH SWGLRPMRGP  180
DEVLGGNGSK ALLGMQSQRH QLHMAEVSNE ALISGERQTE GSPFKNEKKS ESFMASHEEA  240
KNGIDVFGNQ CDEAEFSGGG AQEELDQESS GKGLDLKKRK RTEQKTENNE APQPSIETAA  300
EIRQKGDQNP ASTSNPGAKH GKQASQGSDP PKEEYIHVRA RRGQATNSHS LAERVRREKI  360
SERMKFLQDL VPGCSKVTGK AVMLDEIINY VQSLQRQVEF LSMKLATVNP RMDLNMEGLL  420
AKDVLQPRAG LLSSLVFPPD MPMPFPPLHP PQPGLVQGGL PGNSSDTLQS TPAGGGFRDP  480
TSQHMQASRL WEDELHNVVH SGFNSSPPPN GQETTVSLPL GHTKAEP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276281KKRKRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011070888.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070886.10.0transcription factor bHLH49 isoform X1
RefseqXP_020547445.10.0transcription factor bHLH49 isoform X1
TrEMBLA0A2G9I0E50.0A0A2G9I0E5_9LAMI; Uncharacterized protein
STRINGXP_006484279.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.21e-101bHLH family protein