PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011070839.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bHLH

Protein Properties

Length: 321aa MW: 35412.7 Da PI: 6.0589

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011070839.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.6	2.5e-14	132	178	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L XP_011070839.1 132 KSHSEAERRRRERINNHLARLRSLLPST-----TKTDKASLLAEVIQHVKEL 178 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.926	129	178	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.26E-5	132	181	No hit	No description
Pfam	PF00010	9.2E-12	132	178	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-15	133	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.14E-15	133	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.1E-13	135	184	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF55021	9.61E-5	216	294	No hit	No description
Gene3D	G3DSA:3.30.70.260	7.1E-6	216	275	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MQQHNSLADA YIGIGGAGGG GPGGGGSPLT FPQVSEILPW TLPPVHFSTR DHDPFFLPPP 60 PPSSYGGLFN RRPSGLHYFG YEGGSSDHQL RLIQESLGQV VHPISAPFGL QAELQKMTAQ 120 EIMDAKALAA SKSHSEAERR RRERINNHLA RLRSLLPSTT KTDKASLLAE VIQHVKELKR 180 QTSQLAETSP VPTEIDELTV DNYASDEDGK WVLKASICCE DRPDLLPDLI KALKALRLKT 240 VKAEITTLGG RVRNVLFITG EEEYSNSWEQ EQEQEQEQYS INSIQEALKA VMEKSNGDES 300 GSSGSVKRQR TNTNILEYRS L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	142	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011070839.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX535226	7e-41	JX535226.1 Paulownia kawakamii microsatellite PT50_M13-47_B05_1202069431J sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070838.1	0.0	transcription factor bHLH30
Swissprot	Q9S7Y1	3e-99	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A2G9I1N8	1e-159	A0A2G9I1N8_9LAMI; Uncharacterized protein
STRING	POPTR_0008s11490.1	1e-143	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	4e-88	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]