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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011070838.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | bHLH | ||||||||
Protein Properties | Length: 321aa MW: 35412.7 Da PI: 6.0589 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.6 | 2.5e-14 | 132 | 178 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L XP_011070838.1 132 KSHSEAERRRRERINNHLARLRSLLPST-----TKTDKASLLAEVIQHVKEL 178 79*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.926 | 129 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.26E-5 | 132 | 181 | No hit | No description |
Pfam | PF00010 | 9.2E-12 | 132 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-15 | 133 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.14E-15 | 133 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-13 | 135 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 9.61E-5 | 216 | 294 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 7.1E-6 | 216 | 275 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MQQHNSLADA YIGIGGAGGG GPGGGGSPLT FPQVSEILPW TLPPVHFSTR DHDPFFLPPP 60 PPSSYGGLFN RRPSGLHYFG YEGGSSDHQL RLIQESLGQV VHPISAPFGL QAELQKMTAQ 120 EIMDAKALAA SKSHSEAERR RRERINNHLA RLRSLLPSTT KTDKASLLAE VIQHVKELKR 180 QTSQLAETSP VPTEIDELTV DNYASDEDGK WVLKASICCE DRPDLLPDLI KALKALRLKT 240 VKAEITTLGG RVRNVLFITG EEEYSNSWEQ EQEQEQEQYS INSIQEALKA VMEKSNGDES 300 GSSGSVKRQR TNTNILEYRS L |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 137 | 142 | ERRRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011070838.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX535226 | 7e-41 | JX535226.1 Paulownia kawakamii microsatellite PT50_M13-47_B05_1202069431J sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070838.1 | 0.0 | transcription factor bHLH30 | ||||
Swissprot | Q9S7Y1 | 3e-99 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | A0A2G9I1N8 | 1e-159 | A0A2G9I1N8_9LAMI; Uncharacterized protein | ||||
STRING | POPTR_0008s11490.1 | 1e-143 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4083 | 24 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 4e-88 | bHLH family protein |
Publications ? help Back to Top | |||
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