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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011070770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | bHLH | ||||||||
Protein Properties | Length: 231aa MW: 24343.7 Da PI: 7.6706 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.8 | 6.1e-06 | 23 | 62 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +RRdr+++++++L+ell + K + a+ L +A I+sL XP_011070770.1 23 KRRDRLKEKLSTLKELLLDT----KSKFDQAALLDEAASRIRSL 62 7******************8....79****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.175 | 12 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-4 | 19 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.6E-8 | 23 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.29E-7 | 23 | 67 | No hit | No description |
SuperFamily | SSF47459 | 1.16E-9 | 23 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MEVDAGNTGP GPGEGDANLG LEKRRDRLKE KLSTLKELLL DTKSKFDQAA LLDEAASRIR 60 SLHSQLQALS SSMGRMHMPI AGYQGLSRTS ESGFVGHGIG IEPGMRFQVP YIPFQLHQMA 120 APFATCVVPS LLIPRLDSTL ISNPISGEPT TYQTLLSSTF LNPHPGITQH GVWEPSTNGT 180 LLRPTLGSLT DNGAGRGLGG AGTLFSGGVS KFPGCPATMP LSGTNLSPTY G |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011070770.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070770.1 | 1e-167 | uncharacterized protein LOC105156356 isoform X3 |