 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_011070769.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
||||||||
| Family | bHLH | ||||||||
| Protein Properties | Length: 329aa MW: 35654.3 Da PI: 8.3565 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 26.4 | 1.2e-08 | 114 | 160 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
h Er+RRdr+++++++L+ell + K + a+ L +A I+sL
XP_011070769.1 114 HHASSERKRRDRLKEKLSTLKELLLDT----KSKFDQAALLDEAASRIRSL 160
69999*********************8....79****************99 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| CDD | cd00083 | 4.70E-11 | 108 | 165 | No hit | No description |
| PROSITE profile | PS50888 | 13.052 | 110 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 3.66E-13 | 112 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 7.3E-11 | 113 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 4.5E-6 | 114 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 7.7E-8 | 116 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 329 aa Download sequence Send to blast |
MSEQEILFST TSVAPNFSGC EPYVVLPENF DTFSNILSIL SDDGELRTHP PTTTTTSTSN 60 KVDVPTVQTG ESSFSHKETI IINESSHHHP KIQEGRIEDE GSKKRRVKKR CSKHHASSER 120 KRRDRLKEKL STLKELLLDT KSKFDQAALL DEAASRIRSL HSQLQALSSS MGRMHMPIAG 180 YQGLSRTSES GFVGHGIGIE PGMRFQVPYI PFQLHQMAAP FATCVVPSLL IPRLDSTLIS 240 NPISGEPTTY QTLLSSTFLN PHPGITQHGV WEPSTNGTLL RPTLGSLTDN GAGRGLGGAG 300 TLFSGGVSKF PGCPATMPLS GTNLSPTYG |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 102 | 107 | KKRRVK |
| 2 | 103 | 121 | KRRVKKRCSKHHASSERKR |
| 3 | 107 | 122 | KKRCSKHHASSERKRR |
| 4 | 118 | 123 | ERKRRD |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | XP_011070769.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_011070769.1 | 0.0 | uncharacterized protein LOC105156356 isoform X1 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|