PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011070420.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family NAC
Protein Properties Length: 590aa    MW: 66052.7 Da    PI: 5.2487
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011070420.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.46.7e-54131491128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lp+GfrF+Ptdeelv++yL+ k++g++  + evi+evd++k+ePwdLp+   +k++++ew+fF++rdkky++g+r+nrat++gyWkatgkd++++
  XP_011070420.1  13 LPKGFRFRPTDEELVNHYLRLKINGRHSAV-EVIPEVDVCKWEPWDLPAlsVIKSDDREWFFFCPRDKKYPNGHRSNRATEAGYWKATGKDRTIK 106
                     799************************888.99***************4458889999************************************* PP

             NAM  94 skkgel........vglkktLvfykgrapkgektdWvmheyrl 128
                     s+k++         +g+kktLvfykgrapkge+t+W+mheyr+
  XP_011070420.1 107 SRKSSSsgwanphlIGMKKTLVFYKGRAPKGERTNWIMHEYRA 149
                     *8444455666666***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-627172IPR003441NAC domain
PROSITE profilePS5100558.57613172IPR003441NAC domain
PfamPF023655.8E-2814148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MSSCGNTMKL EALPKGFRFR PTDEELVNHY LRLKINGRHS AVEVIPEVDV CKWEPWDLPA  60
LSVIKSDDRE WFFFCPRDKK YPNGHRSNRA TEAGYWKATG KDRTIKSRKS SSSGWANPHL  120
IGMKKTLVFY KGRAPKGERT NWIMHEYRAT EQDLDGTAPG QGDYVLCRLF HKADEKLYNS  180
NYDEVERSGS FPSTNKSSPD DISSDLFREP PMLDTQVLRE PEDIKKWWAD QSDCMTPTNL  240
APVESCASDG VNHSGEETAT EVYAPLREVS MSEEASYSQF DDKVFDALKS QSYTDLGACL  300
GSPFADDFGN EQNGLHFQDG TSEQDASLSD LLEGLQNRGD YSCVVTSESF NPGRIDGQEH  360
TPSAICKVND CKLHGGTDMK MVQPQGQLCP SFPQEVPSTE NSQPNYAVEE VDSSANTVRH  420
SCYKPVETVY DTNPIKNDPI PVIETGIKIR LRQPRDQPSF EKPANQGTAS RRIRLCTGCG  480
PTSISCEKSK GEKDEPQSLV MQATNDIDRT SNCQESEGRI LYENKKTAET HDPTLAVKPG  540
LASIKLSEKL PVHRCSDYLK EYGVSTYLVI IMSVVFLGMW IYPSLHSVHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-461317515171Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011070420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070419.10.0protein NTM1-like 9
RefseqXP_011070420.10.0protein NTM1-like 9
TrEMBLA0A2G9G5440.0A0A2G9G544_9LAMI; Uncharacterized protein
STRINGMigut.E00715.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.31e-116NAC transcription factor-like 9