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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_011070416.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family |
B3 |
Protein Properties |
Length: 415aa MW: 45611.6 Da PI: 7.2297 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_011070416.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 100.9 | 7.6e-32 | 104 | 208 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89
f+kv tpsdv+k++rlv+pk++ae++ ++ +e++ l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g+ +
XP_011070416.1 104 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvGDlGK 198
89***************************966778999*************************************************66699999 PP
E..EEEEE-S CS
B3 90 felvvkvfrk 99
+l++ ++r+
XP_011070416.1 199 DRLFIDWRRR 208
99***99997 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 415 aa
Download sequence Send
to blast |
MNFMSGRPGF YEEITGSRGV SSSSSSSSSF HYHRAPLPPH TYHHQESYGG AAPPPPASSP 60 TNNCGGGDEP TDDSDDHMLF RRGGDGGSGS CSSNAVVIQR EHMFDKVVTP SDVGKLNRLV 120 IPKQHAEKYF PLDSSTNEKG LLLNFEDRNG KPWRFRYSYW NSSQSYVMTK GWSRFVKEKK 180 LDAGDIVSFQ RGVGDLGKDR LFIDWRRRPD APELPPSLPT LSMPHQFSFH RSIHPWNPLF 240 MQPPSRDYSH FLTTHHHHQS HYHHPPTGYG PYSYNNVVNG NPCPPGSIVY LRSAPGFAGG 300 GGGGVLGGPQ ELGIAGLAQR SSGLEQMVFE SVPVVQGKAA AKRLRLFGVN MDCPISESDE 360 CDILSSTTLP HPTLPPPHFD YNSSSSSSIP SLQLRPNYSD NDDKGKGSMS LDLDI
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5os9_A | 2e-66 | 100 | 209 | 4 | 114 | B3 domain-containing transcription factor NGA1 |
5os9_B | 2e-66 | 100 | 209 | 4 | 114 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. |
Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Lee BH, et al.
The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs. Plant Mol. Biol., 2015. 89(4-5): p. 529-38 [PMID:26433582] - Lozano-Sotomayor P, et al.
Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171] - Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] - Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
DNA recognition by Arabidopsis transcription factors ABI3 and NGA1. FEBS J., 2018. 285(21): p. 4041-4059 [PMID:30183137] - Sato H, et al.
Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187 [PMID:30397148]
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