![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011070399.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 255aa MW: 28066.8 Da PI: 9.2842 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 88.9 | 4.3e-28 | 85 | 144 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy WrKYGqK+ +++ pr+YY+C++a Cpvkkkv+rs +dp++++ tYeg+H+h+ XP_011070399.1 85 VKDGYGWRKYGQKVTGDNPSPRAYYKCSFApACPVKKKVQRSLNDPSLLVATYEGHHHHH 144 58***************************99***************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.4E-27 | 80 | 146 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.442 | 80 | 146 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-24 | 81 | 146 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.5E-29 | 85 | 145 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.6E-22 | 86 | 144 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 255 aa Download sequence Send to blast |
MVEELNRMKS ENKKLSDVLT IVTKNYNDLM QTRKRKAVDP GYYNHSCRYY SCCDETSAGT 60 LPKVIKSNVS RVYVRIDPSD TSLVVKDGYG WRKYGQKVTG DNPSPRAYYK CSFAPACPVK 120 KKVQRSLNDP SLLVATYEGH HHHHHPSQAN VSAVSPPGGA TGTSTTAARI TGERRGSTES 180 LDFLDPLICS KIQKAIAAIE SSEMQQFLVE KMASSLTRNP AFMAALAAAI TGRILDEVIS 240 EENKDVVSNS RGFSV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 9e-19 | 84 | 146 | 13 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_011070399.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ049126 | 9e-46 | KJ049126.1 Sesamum indicum clone TilSSR_20327 microsatellite Sesame_20327 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070399.2 | 0.0 | probable WRKY transcription factor 40, partial | ||||
TrEMBL | A0A022QPJ6 | 9e-93 | A0A022QPJ6_ERYGU; Uncharacterized protein (Fragment) | ||||
STRING | Migut.E01464.1.p | 1e-93 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4500 | 22 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G80840.1 | 4e-61 | WRKY DNA-binding protein 40 |