PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011070392.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRF
Protein Properties Length: 491aa    MW: 52680.1 Da    PI: 7.7174
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011070392.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.65.1e-24151195145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+ep+rC+RtDGKkWRCsr+v +++k+CErH h++r rsrk++e 
  XP_011070392.1 151 DPEPWRCKRTDGKKWRCSRDVAPDQKYCERHAHKSRPRSRKHVEV 195
                     79****************************************985 PP
2QLQ42.32.3e-1590122234
             QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 
                      FTa+Q+q+L++Q  + Ky++a+ PvPp+Ll++
  XP_011070392.1  90 LFTASQWQELERQKVIHKYIMASIPVPPQLLLP 122
                     6*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.5E-689125IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166616.89690125IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.6E-1091122IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.432151195IPR014977WRC domain
PfamPF088793.2E-19152194IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MRNGSERKSS SPSMLDCDVG LGLKMQLPPS ESYSCDGGGS GGPTFGNAGN QVACFGDLYG  60
AADTLSLPRI SHSTALGASG GSMAVSGKAL FTASQWQELE RQKVIHKYIM ASIPVPPQLL  120
LPTSSTSSPL PSLSQSNTSG LDLRFSSNGS DPEPWRCKRT DGKKWRCSRD VAPDQKYCER  180
HAHKSRPRSR KHVEVSAHNP SSQQQPLILP ATSTTTPPLT QPLQTSTPQF PTMASTASFD  240
KTRCVEWFMR GGSSSSSRDT VPVSTCNQQQ QQQWQQLIQT SSSSSSSSRL ELNRDNTDHA  300
KNVSLYQYEG NKQGFMSLNH YIPDTISLQR LEHHQHQQHQ LSSSFLDSKM GSLQESCLSL  360
NTDQGAQTTT RHFIDALSKK FSPSALSLSM SGGNGADGDN ENSDLGNVGM MMNSDRDSDG  420
VLKSQWLSSA SWMNSPPGGP LGEALCLGNA SGTRAGGSNL PSPHGYSNSN TNSSCSKSSC  480
EDGSHALNFI G
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011070392.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0327132e-42KJ032713.1 Sesamum indicum clone TilSSR_3914 microsatellite sesame_3914 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070392.10.0growth-regulating factor 8 isoform X2
TrEMBLA0A2R6QMV21e-100A0A2R6QMV2_ACTCH; Growth-regulating factor like
STRINGXP_009625634.11e-92(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.12e-29growth-regulating factor 8