PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011070385.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 201aa MW: 23016.6 Da PI: 8.0642 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.9 | 4.7e-20 | 13 | 66 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +R++f+++q++ Le++Fe ++ p + +++LA+klgL+ rqV +WFqN+Ra+ k XP_011070385.1 13 NRRRFSDDQIKSLETMFETESRPELRLKQHLANKLGLQPRQVAIWFQNKRARSK 66 699*************************************************99 PP | |||||||
2 | HD-ZIP_I/II | 109.6 | 2.1e-35 | 13 | 103 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ++rr+s++q+k+LE++Fe+e++ e + K++la++Lglqprqva+WFqn+RAR k+kq+E++y++Lk++yd+l+++ e+L+ke+++L ++++ XP_011070385.1 13 NRRRFSDDQIKSLETMFETESRPELRLKQHLANKLGLQPRQVAIWFQNKRARSKSKQIEQEYSMLKSNYDKLASQFEALRKENQNLLTQVD 103 589***********************************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-18 | 7 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.459 | 8 | 68 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.22E-17 | 10 | 80 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.2E-16 | 10 | 72 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.2E-17 | 13 | 66 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.07E-14 | 14 | 69 | No hit | No description |
PRINTS | PR00031 | 9.6E-5 | 39 | 48 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 43 | 66 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 9.6E-5 | 48 | 64 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 5.5E-15 | 68 | 107 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 201 aa Download sequence Send to blast |
MSGGIKKSSR NINRRRFSDD QIKSLETMFE TESRPELRLK QHLANKLGLQ PRQVAIWFQN 60 KRARSKSKQI EQEYSMLKSN YDKLASQFEA LRKENQNLLT QVDRLRRLAD NGDGDEHDNK 120 NHFTLSSSEN PRLLLDINCQ ELCIPTCSDL NRKVGYLEEE ADALNMAQIA GGSLASPENR 180 GSFDSSTFLD NTGSGSQWWN F |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_011070385.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070385.1 | 1e-148 | homeobox-leucine zipper protein ATHB-12-like | ||||
Swissprot | P46897 | 3e-37 | ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7 | ||||
TrEMBL | A0A2G9GG26 | 1e-106 | A0A2G9GG26_9LAMI; Uncharacterized protein | ||||
STRING | Migut.E00626.1.p | 7e-89 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10273 | 21 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46680.1 | 1e-39 | homeobox 7 |
Publications ? help Back to Top | |||
---|---|---|---|
|