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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011070329.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 816aa MW: 90506.5 Da PI: 5.3959 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.5 | 3e-20 | 91 | 146 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k XP_011070329.1 91 KKRYHRHTTRQIQEMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 146 688999***********************************************998 PP | |||||||
2 | START | 146.4 | 2.6e-46 | 291 | 516 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 la + ++elvk+ +ep+Wv + + +n +e+ + f+ s + +++ea r ++vv+m++ +lv +ld + +W e ++ +a+t XP_011070329.1 291 LAVSSMDELVKMCHTAEPLWVPAAdtgkQVLNLEEYARMFSWSANlkqhspqFRTEATRHTAVVIMNSITLVDAFLDAN-KWMELFPciisRAKT 384 57789*******************88888888888888888777799999*****************************.*************** PP EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS START 82 levissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwve 168 l+v+ s g l+lm+ae q+lsplvp R+ f+Ry++ ++g+w+ivd +d + +s++ +++pSg++i++++ng+s+vtwve XP_011070329.1 385 LQVVHSEvsghanGSLHLMYAEVQVLSPLVPtREAHFLRYCQHnAEEGTWAIVDFPLDGLHNDY-PPSFAYYKRRPSGCIIQDMPNGYSRVTWVE 478 *******************************************9**************666555.45788888********************** PP -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 h+++++ +h+++ slv+sg+a+ga++w+a lqrqce+ XP_011070329.1 479 HAEVEDGPIHQVFSSLVSSGAAFGAQRWLAVLQRQCER 516 ************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-20 | 78 | 142 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.34E-19 | 80 | 149 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.232 | 88 | 148 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-18 | 89 | 152 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.92E-19 | 91 | 149 | No hit | No description |
Pfam | PF00046 | 1.1E-17 | 91 | 146 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 123 | 146 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 43.373 | 281 | 519 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.3E-32 | 282 | 518 | No hit | No description |
CDD | cd08875 | 5.70E-116 | 285 | 515 | No hit | No description |
SMART | SM00234 | 3.7E-34 | 290 | 516 | IPR002913 | START domain |
Pfam | PF01852 | 1.3E-38 | 292 | 516 | IPR002913 | START domain |
SuperFamily | SSF55961 | 5.82E-17 | 534 | 774 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 816 aa Download sequence Send to blast |
MFGDCQVLSA MGGNGMPSDN ALYSTSMQHP NTTFMPAINP FNIFSPIIPK EEITGMAKSK 60 EELMESGSGS EHIEGFSGNE QEAEQQPQAK KKRYHRHTTR QIQEMEALFK ECPHPDDKQR 120 LKLSQELGLK PRQVKFWFQN RRTQMKAQQD RQDNVVLRAE NESLKNENYR LQATLRNIVC 180 PNCGGPAMMG EMGYDEQQLR IENARLKEEL ERMCCLVSQY TGRPMPGMGP PPLLPTSLDL 240 DVSSYPRKFE QDHMTNCPPD HMIPLPFMPE NSQFPGNALI LEEERPLALD LAVSSMDELV 300 KMCHTAEPLW VPAADTGKQV LNLEEYARMF SWSANLKQHS PQFRTEATRH TAVVIMNSIT 360 LVDAFLDANK WMELFPCIIS RAKTLQVVHS EVSGHANGSL HLMYAEVQVL SPLVPTREAH 420 FLRYCQHNAE EGTWAIVDFP LDGLHNDYPP SFAYYKRRPS GCIIQDMPNG YSRVTWVEHA 480 EVEDGPIHQV FSSLVSSGAA FGAQRWLAVL QRQCERLASL MARNISDLGV IPSPEARKSL 540 MNLAQRMTRT FCLNISTSYG QSWTALSDCA DDTVRITTRK VTEPGQPNGL ILSAVSTTWL 600 PYQHNQVFDF LRDERRRAQL EVLSNGNSLH EVAHIANGSH PGNCISLLRI NVASNSSQSV 660 ELVLQESCSD DSGSIVVYTT IDVDAIQMAM NGEDPSCIPL LPLGFVIVPM GQIANNDSGI 720 ADSKQASENG HLPDSGCLLT VGLQVLASTI PSAKLNLSSV TAINHHLCNT VQQINAVLGN 780 ISGNNFSENV DVLGSNIDPE PALPAENKPT DPCATS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011070329.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070329.1 | 0.0 | homeobox-leucine zipper protein HDG5 isoform X2 | ||||
Swissprot | A2ZAI7 | 0.0 | ROC3_ORYSI; Homeobox-leucine zipper protein ROC3 | ||||
TrEMBL | A0A2G9HN19 | 0.0 | A0A2G9HN19_9LAMI; Transcription factor, contains HOX domain | ||||
STRING | Migut.E00753.1.p | 0.0 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46880.1 | 0.0 | homeobox-7 |