PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011070274.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 287aa    MW: 32418.8 Da    PI: 7.6221
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011070274.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.6e-1474125155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P +   + ++ + a+i+  A+e++k+L+
  XP_011070274.1  74 QRMTHIAVERNRRKQMNEHLAVLRSLMPDS---YVQRGDQASIVGGAIEFVKELE 125
                     79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-1672142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-1372127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.29E-1372129No hitNo description
PROSITE profilePS5088815.12373124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-1174125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-1079130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MALEALSSTE LFNFIMFDSA APTPFTCNND SSEASPQEIA PRLSHPPPPQ DTTTRKKRRR  60
RPKVCKNKEE AETQRMTHIA VERNRRKQMN EHLAVLRSLM PDSYVQRGDQ ASIVGGAIEF  120
VKELEHILQS LEAKKFTLLE QQVNNKDQYE KSDDQNYKQV MGSSSPFAQF FAYPQFSCSH  180
NQLGNKYTSQ SKAAIADIEV TLIETHANIR ILSRRRLRQL SKIVASFHSV FLSILHLNVT  240
TLDSLVLYSI SAKVEEGCQL NSADDIAGAV HHMLRIIEEE AILGCQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15460RKKRRRR
25560KKRRRR
37485RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011070274.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070274.10.0transcription factor bHLH71
SwissprotQ9C7T41e-76BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2G9GIK01e-163A0A2G9GIK0_9LAMI; Uncharacterized protein
STRINGMigut.O00536.1.p1e-142(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56322436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-71bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]