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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_011070190.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family |
LBD |
Protein Properties |
Length: 244aa MW: 26140 Da PI: 7.1004 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_011070190.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 126.6 | 1.1e-39 | 38 | 139 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94
+C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v++i +lqqq+++l+ael
XP_011070190.1 38 PCGACKFLRRKCVSGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLMHIPANRRHDAVVTISYEAQARLSDPVYGCVSTIIALQQQVASLQAEL 132
7***********************9989******************************************************************* PP
DUF260 95 allkeel 101
++++++l
XP_011070190.1 133 SVVQTQL 139
**99885 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway |
GO:1900150 | Biological Process | regulation of defense response to fungus |
Sequence ? help Back to Top |
Protein Sequence Length: 244 aa
Download sequence Send
to blast |
MDVPPGDGTS DNRRVGPGKR RAATHPEAAD GAPPANAPCG ACKFLRRKCV SGCIFAPHFG 60 SDQGAARFAA VHKVFGASNV SKLLMHIPAN RRHDAVVTIS YEAQARLSDP VYGCVSTIIA 120 LQQQVASLQA ELSVVQTQLL NTRFAMANAL HHNSPPPPQQ QQQQHIAATY SNTSSASNTL 180 ISMHGFSPNL GSDTTAPSKT TFHDHPMNSS ARLSAPTTAT QHDHEEEEED ESHDPVAFAN 240 HIFH
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ034839 | 2e-56 | KJ034839.1 Sesamum indicum clone TilSSR_6040 microsatellite sesame_6040 sequence. |