PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011070186.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 231aa MW: 25740.7 Da PI: 9.0214 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.9 | 2e-19 | 97 | 151 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t++q++ Le+ F+++ ++++++++ LA+kl+L+ rqV vWFqNrRa+ k XP_011070186.1 97 RKKLRLTRDQITLLEDSFRQHTTLNTAQKQTLAEKLNLKPRQVEVWFQNRRARTK 151 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 112.5 | 2.7e-36 | 97 | 188 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rl+++q++lLE+sF+++++L++ +K++la++L+l+prqv+vWFqnrRARtk+kq+E+d e+Lk+++++l+een+rL+ke +eLr+ lk XP_011070186.1 97 RKKLRLTRDQITLLEDSFRQHTTLNTAQKQTLAEKLNLKPRQVEVWFQNRRARTKLKQTEVDREFLKKNCERLSEENRRLKKELTELRSLLK 188 69*************************************************************************************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-18 | 80 | 154 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.04E-18 | 85 | 154 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.362 | 93 | 153 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.9E-15 | 95 | 157 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.0E-16 | 97 | 151 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.22E-14 | 97 | 154 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 128 | 151 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 7.3E-13 | 153 | 197 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MDDENDEARL GLGLGLGSSE CTPKRDHSRK NKRVFFLDLS IPLHPSDDHG TSADDDSSSS 60 LKIIGDENEK QGCKNYGSFS CKDQDDDSIN CSKDFSRKKL RLTRDQITLL EDSFRQHTTL 120 NTAQKQTLAE KLNLKPRQVE VWFQNRRART KLKQTEVDRE FLKKNCERLS EENRRLKKEL 180 TELRSLLKIE NPPAAAASSP GGGGAGAAEK SGKRLRVAAG GPRTLNLNDG G |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 95 | 101 | SRKKLRL |
2 | 145 | 153 | RRARTKLKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011070186.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070186.1 | 1e-168 | homeobox-leucine zipper protein HOX17-like | ||||
TrEMBL | A0A022RC48 | 6e-76 | A0A022RC48_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA16139 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 5e-40 | homeobox from Arabidopsis thaliana |