PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011070053.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 359aa    MW: 41394.5 Da    PI: 9.3335
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011070053.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.3e-066283223
                    EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                    +C+ C+ sF+ + +Lk+H+++H
  XP_011070053.1 62 TCEVCSSSFRKPAHLKQHMQSH 83
                    7*******************99 PP
2zf-C2H217.79.6e-0689113123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     ++Cp  +C+ s++rk++L+rH+  H
  XP_011070053.1  89 FTCPvdNCHSSYRRKDHLTRHMIQH 113
                     89********************887 PP
3zf-C2H217.79.7e-06118143123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     ++Cp   C+++F  + n+krHi+  H
  XP_011070053.1 118 FECPieECKRRFAFQGNMKRHIKElH 143
                     89*********************988 PP
4zf-C2H219.92e-06157181123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     y+Cp   Cgk+F+  s L +H  +H
  XP_011070053.1 157 YVCPelGCGKVFKYLSKLSKHEDSH 181
                     9********************9888 PP
5zf-C2H213.90.00015248272223
                     EET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                     kC+   C  +F + snL++H++  H
  XP_011070053.1 248 KCSfkGCLHTFATESNLNQHMKAvH 272
                     688889***************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355291941IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.7251946IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-45780IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.056183IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.6536188IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SuperFamilySSF576671.87E-1073115No hitNo description
Gene3DG3DSA:3.30.160.601.9E-1281115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.004889113IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.59889118IPR007087Zinc finger, C2H2
PROSITE patternPS00028091113IPR007087Zinc finger, C2H2
SuperFamilySSF576678.87E-6116144No hitNo description
Gene3DG3DSA:3.30.160.609.7E-6116140IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.023118143IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.658118148IPR007087Zinc finger, C2H2
PROSITE patternPS000280120143IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.8E-7153181IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0028157181IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.72157186IPR007087Zinc finger, C2H2
PROSITE patternPS000280159181IPR007087Zinc finger, C2H2
SMARTSM003554.3189214IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-4191212IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280191214IPR007087Zinc finger, C2H2
SMARTSM0035523217238IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.17E-7230285No hitNo description
SMARTSM003550.0011247272IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.279247277IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-5248274IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280249272IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-4275300IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003559.4278304IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280280304IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEIEAEKARV VIFRDIRRYY CEYCGICRSK KSLISSHILS HHQEENVTEV NNGTSGGDKL  60
STCEVCSSSF RKPAHLKQHM QSHSLERPFT CPVDNCHSSY RRKDHLTRHM IQHQGKLFEC  120
PIEECKRRFA FQGNMKRHIK ELHQESSSTN VEPPKEYVCP ELGCGKVFKY LSKLSKHEDS  180
HVKLDTAGAF CSEPGCMKYF TNKQSLKEHL CSCHQYIVCD KCGSKQLKKN FKRHLSMHEA  240
AISMERIKCS FKGCLHTFAT ESNLNQHMKA VHLGLKPYAC SIPGCHMKFA FKHVRDKHKK  300
SGYHVYTPGN FEESDEQFRS RPRGGRKRKR PTIETLLRKR VVPPTNSDVS KLLSADSDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A3e-146620920155PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D3e-146620920155PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320328RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011070053.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070053.10.0transcription factor IIIA isoform X1
SwissprotQ84MZ41e-133TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2Z7CXK81e-179A0A2Z7CXK8_9LAMI; Zinc finger protein 16-like
STRINGMigut.K00168.1.p1e-178(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36442447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-118transcription factor IIIA