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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011069976.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | WOX | ||||||||
Protein Properties | Length: 257aa MW: 28091.2 Da PI: 6.1593 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 49.5 | 7e-16 | 26 | 86 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ XP_011069976.1 26 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKMLekfgAVGDANVFYWFQNRRSRSRR 86 89*****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 109 | 2.7e-35 | 25 | 88 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri+++Le++G+++d+NVfyWFQNr++R+r++q XP_011069976.1 25 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKMLEKFGAVGDANVFYWFQNRRSRSRRRQ 88 589***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.52E-14 | 22 | 93 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.451 | 22 | 87 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-6 | 24 | 91 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-9 | 25 | 91 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.3E-13 | 26 | 86 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MEDQEQEMGP RASHAPEGDQ RSEPVRSRWT PKPEQILILE SIFNSGMVNP PKDETVRIRK 60 MLEKFGAVGD ANVFYWFQNR RSRSRRRQRQ IQASLSAAGE QAQPQPRGGG GAIQFENTVP 120 GGFLPHLSTY PMSTSSCLQV GSGSSSALGP GANDGTTSND FFPFSGHPGG LQELEQNTFF 180 GPPETSSLHN YQSEAITVFI NGVATEVGRG PVDMKAMFGG DFVLFHSSGV PVQVNEFGFL 240 VQSLQHGESY FLVPRHS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011069976.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011069976.1 | 0.0 | WUSCHEL-related homeobox 11-like | ||||
Swissprot | Q6X7J3 | 1e-62 | WOX11_ARATH; WUSCHEL-related homeobox 11 | ||||
TrEMBL | A0A2G9GS28 | 1e-111 | A0A2G9GS28_9LAMI; Uncharacterized protein | ||||
STRING | XP_009609298.1 | 3e-82 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6166 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17810.2 | 4e-36 | WUSCHEL related homeobox 12 |
Publications ? help Back to Top | |||
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