PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011069921.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | AP2 | ||||||||
Protein Properties | Length: 493aa MW: 53188.4 Da PI: 7.2546 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.1 | 1.2e-14 | 148 | 206 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 ++GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_011069921.1 148 IFRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 206 69******************666664477446*************************98 PP | |||||||
2 | AP2 | 47.3 | 5.1e-15 | 249 | 300 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_011069921.1 249 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 300 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.87E-21 | 147 | 216 | No hit | No description |
SuperFamily | SSF54171 | 6.54E-17 | 147 | 216 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-15 | 148 | 215 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-28 | 148 | 220 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.703 | 148 | 214 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-11 | 148 | 206 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-6 | 149 | 160 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-18 | 249 | 310 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.45E-23 | 249 | 310 | No hit | No description |
Pfam | PF00847 | 6.3E-10 | 249 | 300 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-18 | 250 | 309 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-33 | 250 | 314 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 250 | 308 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-6 | 290 | 310 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0040019 | Biological Process | positive regulation of embryonic development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 493 aa Download sequence Send to blast |
MDMDSPHHNW LAFSLSNHSL FQPLFNSNST INAGGVGDHQ EHGNGTADRH NLSVLGPKLE 60 NFLGAAGSSS SADGVAQFDG GAQAGISTMP GVEIYDESEL KTIAASFLRG FSTEQTDDAQ 120 KQLAVAVAPP PDPPAKKAAE TFGQRTSIFR GVTRHRWTGR YEAHLWDNSC RREGQSRKGR 180 QVYLGGYDKE EKAARAYDLA ALKYWGATTT TNFPVSEYEK EMEEMKHMTR QEFVASLRRK 240 SSGFSRGASI YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG 300 LNAVTNFDMS RYDVRSIASS NLPIGGATNK SKTASESISD SRSIDGLNSE GNNKDLSSST 360 SSVPYPSQNL AATISFALPM KQDQSTWAAL GYQNPAKNPN TSGSTVLTNG TTPHFGMEFQ 420 DSNNEGLIFT GGNGGYYGTT SSSVATTNEG ASRNAVDGGG GEWVAPVVVH GGFVQAGRRR 480 NLSAFQTPIF GME |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011069921.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011069921.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 isoform X1 | ||||
Swissprot | Q6PQQ3 | 1e-146 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A4D9BLM4 | 0.0 | A0A4D9BLM4_SALSN; AP2-like factor, ANT lineage | ||||
STRING | Migut.J01490.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2246 | 24 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-126 | AINTEGUMENTA-like 5 |
Publications ? help Back to Top | |||
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