PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011069739.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | ERF | ||||||||
Protein Properties | Length: 149aa MW: 16633.6 Da PI: 9.7331 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.8 | 4.7e-17 | 29 | 78 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +k +g+WvAeIr+p +kr r++lg++ ++ Aa+a++ a +l+g XP_011069739.1 29 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPVAAARAYDTAVFYLRG 78 69*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.997 | 29 | 86 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-36 | 29 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-20 | 29 | 87 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.1E-11 | 30 | 41 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.56E-26 | 30 | 87 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-29 | 30 | 87 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-10 | 30 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 68 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MEGSCCTSSS SSTDQNPKRK PRQHTQDKPY RGIRMRKWGK WVAEIREPNK RSRIWLGSYS 60 SPVAAARAYD TAVFYLRGPS ARLNFPECIV HDPQQHDLSA AAIRKKATEV GAMVDALQAA 120 AHPRGNSGRV AHEKPDLNEY PSPETSEDN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-15 | 26 | 86 | 2 | 63 | ATERF1 |
3gcc_A | 4e-15 | 26 | 86 | 2 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 16 | 22 | PKRKPRQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00276 | DAP | Transfer from AT2G23340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011069739.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011069739.1 | 1e-109 | ethylene-responsive transcription factor ERF011-like | ||||
Swissprot | O22174 | 2e-49 | ERF08_ARATH; Ethylene-responsive transcription factor ERF008 | ||||
TrEMBL | A0A2G9FZ01 | 5e-76 | A0A2G9FZ01_9LAMI; Uncharacterized protein | ||||
STRING | Migut.N02735.1.p | 2e-70 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA943 | 23 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23340.1 | 3e-51 | DREB and EAR motif protein 3 |
Publications ? help Back to Top | |||
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