PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011069597.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bZIP

Protein Properties

Length: 162aa MW: 17566.5 Da PI: 10.0183

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011069597.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.8	1.6e-15	82	143	1	62
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 +ke kr +r+ +NR++A+ R+RKka++ Le +vkeLe++N +L ++l++l++e + l++ XP_011069597.1 82 DKENKRLKRLLRNRVSAQQARERKKAYLIDLEARVKELETKNAELEERLSTLQNENQMLRQI 143 5899*****************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.1E-15	82	146	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.4E-14	83	144	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	12.564	84	147	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.19E-13	86	144	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.6E-17	86	146	No hit	No description
CDD	cd14704	1.72E-18	87	138	No hit	No description
PROSITE pattern	PS00036	0	89	104	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MQEQATSSIA ASSLPSSSER SSSSALHLEV KEGMESDDEI RRVPEIGSEA AGTTTSGRDG 60 SVAGPTQPSA VGSKRRGRSP ADKENKRLKR LLRNRVSAQQ ARERKKAYLI DLEARVKELE 120 TKNAELEERL STLQNENQML RQILKNTTAG SQPGSCKGTG DN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2oqq_A	1e-14	107	146	3	42	Transcription factor HY5
2oqq_B	1e-14	107	146	3	42	Transcription factor HY5
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269\|PubMed:15178762}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011069597.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011069597.1	1e-112	transcription factor HY5
Swissprot	Q9SM50	4e-79	HY5_SOLLC; Transcription factor HY5
TrEMBL	A0A4D8YDQ0	3e-83	A0A4D8YDQ0_SALSN; Transcription factor HY5
STRING	Solyc08g061130.2.1	2e-77	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8037	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11260.1	2e-48	bZIP family protein

Publications ? help Back to Top
Wang F, et al. Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato. Plant Physiol., 2018. 176(2): p. 1311-1326 [PMID:29146776] Liu CC, et al. The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato. Plant Cell Environ., 2018. 41(8): p. 1762-1775 [PMID:29566255]