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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010943849.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 317aa MW: 35114 Da PI: 8.8738 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.4 | 9.7e-12 | 146 | 193 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ +f eL ++P + kK++Ka++L Av+Y+k+L+ XP_010943849.1 146 QEHIIAERKRREKLSRRFIELSAVIPGL-----KKVDKASVLGDAVKYVKELE 193 6799************************.....9****************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.694 | 143 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.8E-9 | 146 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-15 | 147 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.88E-15 | 147 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.27E-11 | 148 | 197 | No hit | No description |
SMART | SM00353 | 1.3E-12 | 149 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 9.698 | 250 | 317 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MDESRLIYEC DMISFSRLTP QRVAPSLVGG FQQLLSSESY TSYPSFHPVE TPSHKGFIER 60 PKKMQKIDSW NSCTTEWNPT FVPDASSADS LLFPKPNSPN DVFGRAAASQ EEMRTLVSNA 120 SAQNYETLAR QGSKMRKMGS TLSQAQEHII AERKRREKLS RRFIELSAVI PGLKKVDKAS 180 VLGDAVKYVK ELEARVKTLE DQNAKRTVES VVLVKKSKLS ADADGSSSNG CSAEKPLPEI 240 EAMLSEKTVL IRIHCDNHRG VLARLVSEIE KAHLTVTNAS VMPFPSSSIH ITVTAKVQEE 300 FSVEMGDLVR KLNSALS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 151 | 156 | ERKRRE |
2 | 152 | 157 | RKRREK |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019708608.1 | 0.0 | transcription factor bHLH18 isoform X2 | ||||
Swissprot | Q9T072 | 8e-53 | BH025_ARATH; Transcription factor bHLH25 | ||||
TrEMBL | A0A2H3ZN28 | 1e-153 | A0A2H3ZN28_PHODC; transcription factor bHLH18-like | ||||
STRING | XP_008787834.1 | 1e-170 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4213 | 35 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 4e-48 | bHLH family protein |