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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010943606.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | WRKY | ||||||||
Protein Properties | Length: 709aa MW: 77392.6 Da PI: 6.3604 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.6 | 2.2e-32 | 264 | 321 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers d++++ei+Y+g+Hnh+k XP_010943606.1 264 EDGYNWRKYGQKHVKGSEYPRSYYKCTHQSCQVKKKVERSL-DGQITEIIYKGTHNHPK 321 7****************************************.***************85 PP | |||||||
2 | WRKY | 104.7 | 4.8e-33 | 478 | 536 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe XP_010943606.1 478 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERASHDLKSVITTYEGKHNHE 536 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.5E-29 | 254 | 322 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-25 | 262 | 322 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.1E-36 | 263 | 321 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.743 | 264 | 322 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.2E-25 | 264 | 320 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.3E-37 | 463 | 538 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.72E-29 | 470 | 538 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 37.539 | 473 | 538 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.0E-38 | 478 | 537 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.9E-25 | 479 | 536 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 709 aa Download sequence Send to blast |
MESVSSARKN QMTSSVHCME EKEESIGMWG EAGEGGGGGV GGGSMEPGPS AGKNAGSIAE 60 RRAAMSGFNP TPRLNTARFR SVSPLSSPGV RSPFLTIPPG LSPTALLDSP VMLPNSQAQP 120 SPTTGSFQLP SPGHEILALY AVNACTDKAN CEDIDSSFMF KTQTNNVSVP CLQSAQQMRM 180 DFEDQACITK QEKGYASDLQ RDVNVSEDNM VEAKCSSVQT CYHPPISNQA HHPEDLSNGK 240 DTQSEQIFEE DQSFSSSGVG RPSEDGYNWR KYGQKHVKGS EYPRSYYKCT HQSCQVKKKV 300 ERSLDGQITE IIYKGTHNHP KPQPTRRSAF GSSFLMNEIS DSAAGFGSIT NVEGGSIWRN 360 SQKGSKDKNC VDLRADGLEL TSSTSVVTEL SDPLSTAQEK CSNILTDIPE LSSTLASQGV 420 DEDGATQGSM PFEDDDEDDE TESKRRKKES CVIDSNPASR AVREPRVVVQ TVSEVDILDD 480 GYRWRKYGQK VVKGNPNPRS YYKCTHPGCS VRKHVERASH DLKSVITTYE GKHNHEVPVA 540 RNNNHMISGS SMQPASNAQT SMTLPGSTTA SRPQTQVQNL APHFDKKFEF GCGNFTAGYA 600 GCFTGNSKVG ASPCYEMQMP HLESVSFSTF GLNNSYSGAH QAIPISNIIQ DFSISFPTSH 660 VRHSNLTLAG YDVNNHGRPS SIELHPLIMQ QSRESDMKQF RQPKPEQDN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-35 | 253 | 538 | 2 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 1e-35 | 253 | 538 | 2 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010943606.1 | 0.0 | probable WRKY transcription factor 20 isoform X3 | ||||
TrEMBL | A0A2H3YID4 | 0.0 | A0A2H3YID4_PHODC; probable WRKY transcription factor 3 | ||||
STRING | XP_008799188.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2075 | 38 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 1e-103 | WRKY DNA-binding protein 2 |