PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010943590.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 380aa MW: 41482.5 Da PI: 6.2323

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010943590.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.1	7.5e-09	204	252	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L+ l+P + +k Ka +L + ++Y++sLq XP_010943590.1 204 NSHSLAERIRRERISERMRFLQGLVPGC----NKITGKAVMLDEIINYVQSLQ 252 58************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.75E-16	199	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.4E-15	201	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.875	201	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-6	204	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.3E-8	207	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MSACKEVSEM VAPGYYATGA AQFVASDWDP LLSVDQNVDF NGSAGHSSYN VGVPGSKGGS 60 IIDSNEQIPR LSSFGSESFT EMLSSFTLPA ATVPCPPDIP LGKEHETQKN LKGKKRKGMS 120 QCITPSPHSP AERVQDAEAG RQKDISPDSV KSSMDDENKQ KSEPNSSANS HDSTDELAKK 180 HSHNGGDAKD DHNHARAKRG QATNSHSLAE RIRRERISER MRFLQGLVPG CNKITGKAVM 240 LDEIINYVQS LQKQVEFLSM KLVAVNPELD LDIKQILSKD ILHSLHRSPA IPGFGMELNQ 300 THPHLHGSSS CEFKQAEMLL SSKPTTGDII RATNSHIFPL GQMQASSVWD AELQNIFQMG 360 LISNPLLDCD KLNGEMEVEP

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MSACKEVSEM VAPGYYATGA AQFVASDWDP LLSVDQNVDF NGSAGHSSYN VGVPGSKGGS  60
IIDSNEQIPR LSSFGSESFT EMLSSFTLPA ATVPCPPDIP LGKEHETQKN LKGKKRKGMS  120
QCITPSPHSP AERVQDAEAG RQKDISPDSV KSSMDDENKQ KSEPNSSANS HDSTDELAKK  180
HSHNGGDAKD DHNHARAKRG QATNSHSLAE RIRRERISER MRFLQGLVPG CNKITGKAVM  240
LDEIINYVQS LQKQVEFLSM KLVAVNPELD LDIKQILSKD ILHSLHRSPA IPGFGMELNQ  300
THPHLHGSSS CEFKQAEMLL SSKPTTGDII RATNSHIFPL GQMQASSVWD AELQNIFQMG  360
LISNPLLDCD KLNGEMEVEP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	116	QKNLKGKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269\|PubMed:23161888, ECO:0000269\|PubMed:24130508}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010943590.1	0.0	transcription factor bHLH74 isoform X1
Swissprot	Q6NKN9	6e-51	BH074_ARATH; Transcription factor bHLH74
TrEMBL	A0A2H3YI90	0.0	A0A2H3YI90_PHODC; transcription factor bHLH74-like isoform X1
STRING	XP_008798908.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP50900	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	2e-42	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]