PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010943550.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family SBP
Protein Properties Length: 446aa    MW: 47684.4 Da    PI: 9.8137
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010943550.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP136.58e-43155230176
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                     +CqvegC+ dl+ ak y+ rhkvC +hskap+v+v gleqrfCqqCsrfh+lsefD++krsCrrrLa+hnerrrk+
  XP_010943550.1 155 RCQVEGCKLDLTGAKAYYCRHKVCGMHSKAPKVIVGGLEQRFCQQCSRFHQLSEFDQGKRSCRRRLAGHNERRRKP 230
                     6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.3E-35149217IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.351153230IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.96E-40154233IPR004333Transcription factor, SBP-box
PfamPF031104.8E-33156229IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MAQMAGVGFM LVKESAAERP MKRKSEGERS ERNLPILSFS LSFKGTHRLS APQEKSHLPL  60
GPSSVSKSPW TGLCRGREME SGSRSPAVSG AGGPGDSLNG LKFGKKIYFE DGGGGGNSSS  120
SSSSSSSKVP ALAAPPPPPA RRGKGVVHGG QGPPRCQVEG CKLDLTGAKA YYCRHKVCGM  180
HSKAPKVIVG GLEQRFCQQC SRFHQLSEFD QGKRSCRRRL AGHNERRRKP PPGPLSSRYG  240
RLAASFHEDP SRLRSFLLDF SYPRLPSTGR DVWPTVRASD RVTGNQWHGG LDPPTSAVMV  300
QGPQHYLQNS AGGTLFSTPE VPSGECLSGV SDSSCALSLL STQPWESNTT RNRAPTIPAS  360
SSFDGIPTAR SVAANDYISP WALRGHGGRS SSHEIQHEMG LGLVTEAGSS QFSGELELAL  420
QGNGQCLDHG SDKTYDHAGH VMHWSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-30149229484squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010943550.10.0squamosa promoter-binding-like protein 17 isoform X2
SwissprotA3C0574e-99SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBLA0A2H3X0080.0A0A2H3X008_PHODC; squamosa promoter-binding-like protein 14
STRINGXP_008776259.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.12e-57squamosa promoter binding protein-like 9