PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010943488.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 300aa MW: 33318.8 Da PI: 4.878 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.9 | 6.4e-12 | 135 | 177 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L XP_010943488.1 135 MAERRRRKRLNDRLSLLRSIVPKiS------KMDRTSILGDTIDYVKEL 177 89*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.85 | 128 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.01E-15 | 132 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-9 | 134 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.1E-12 | 134 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-14 | 135 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.26E-4 | 135 | 182 | No hit | No description |
CDD | cd04873 | 0.00694 | 226 | 264 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MELDEQSLLE ELFAPRGKTW DTSPTGTTKL LFSTEGGTDC FPETPSPVSP DYAPFEGLSF 60 QPEPIFDCLS EDNEEIGLIH EEKNSTLYDE QQSNCKVEPG QTVHTPSVFG GAGPCLERKN 120 GRQKKVEGLA SKNLMAERRR RKRLNDRLSL LRSIVPKISK MDRTSILGDT IDYVKELLER 180 IKSLQQEAKV GTDELNLLNT LNGVKPNEML PRNSPKFNVE RREGDTRLEI CCAAKPGLLL 240 STVSTLEALG LEIQQCAVSC FNDFGMRACC SEDKEQRAII GSEEIKQALL RTAGYGGKCV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 136 | 143 | ERRRRKRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010943488.1 | 0.0 | transcription factor bHLH93 isoform X2 | ||||
Swissprot | Q9LSL1 | 2e-70 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A2H3Y1C6 | 1e-134 | A0A2H3Y1C6_PHODC; transcription factor bHLH93-like | ||||
STRING | XP_008806159.1 | 1e-120 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 4e-65 | beta HLH protein 93 |
Publications ? help Back to Top | |||
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