PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010943487.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 333aa MW: 36787.8 Da PI: 4.8838

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010943487.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.7	7.5e-12	168	210	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L XP_010943487.1 168 MAERRRRKRLNDRLSLLRSIVPKiS------KMDRTSILGDTIDYVKEL 210 89*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.85	161	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.66E-15	165	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.1E-12	167	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-9	167	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.74E-5	168	215	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-14	168	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	0.00804	259	297	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MELDEQSLLE ELFAPRGKTW DTSPTGTTKL LFSTEGGTDC FPETPSPVSP DYAPFEGLSF 60 QPEPIFDCLS EVCCPFGSGF FSAAPDFQTS CTMMTHSTIS LLAQDNEEIG LIHEEKNSTL 120 YDEQQSNCKV EPGQTVHTPS VFGGAGPCLE RKNGRQKKVE GLASKNLMAE RRRRKRLNDR 180 LSLLRSIVPK ISKMDRTSIL GDTIDYVKEL LERIKSLQQE AKVGTDELNL LNTLNGVKPN 240 EMLPRNSPKF NVERREGDTR LEICCAAKPG LLLSTVSTLE ALGLEIQQCA VSCFNDFGMR 300 ACCSEDKEQR AIIGSEEIKQ ALLRTAGYGG KCV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	169	176	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010943487.1	0.0	transcription factor bHLH93 isoform X1
Swissprot	Q9LSL1	5e-70	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A2H3Y1C6	1e-160	A0A2H3Y1C6_PHODC; transcription factor bHLH93-like
STRING	XP_008806159.1	1e-132	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1302	37	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	9e-65	beta HLH protein 93

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]