PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010943416.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HSF
Protein Properties Length: 507aa    MW: 56136.4 Da    PI: 4.5925
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010943416.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.51.4e-35261182103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d++++ ++sw   +nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++
  XP_010943416.1  26 FLSKTYDMVDDPATDAIVSWGPGNNSFVVWNTPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKT 111
                     9*********************99*****************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+k +
  XP_010943416.1 112 INRRKPA 118
                     ****965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.9E-3920110IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.63E-3521115IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.3E-6322115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-202649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-3126115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-206476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-207789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MDAVAGGEGS PAGANAGLGG NAPPPFLSKT YDMVDDPATD AIVSWGPGNN SFVVWNTPEF  60
ARDLLPKYFK HNNFSSFVRQ LNTYGFRKVD PDRWEFANEG FLRGQKHLLK TINRRKPAQT  120
HRQSQQSQAQ DTNVAACVEV GKFGLEEEIE RLKRDKNVLM QELVRLRQQQ QATDNQFHTL  180
GQRLQGMEQR QQQMMSFLAK AMQSPEFLAQ FVQQNDNNRR IAGVNKKRRS PAQDNKLDGE  240
STSSDGQIIK YRPLMNEAAK AMLMQILKHD ASPRLESLGN SENFLVENLA SLLQAFDGRT  300
SSSRNSGVTL SEVPTISGTP YLPPSSRCSA ISSSSVPSEI QSAATVADMV STAELPNMSI  360
LSRVPEAISQ QTDTGISEFS QMEGVVPNDS AVSISSENYV QPQAGCIYMN PISAVMDDPV  420
PIETEKFSSD ADINIFTDEE QKLPSINDSF WEQFLMTSPL SGDAEDTDSS IHEAKEMQAE  480
QENAWDSAEN MDHLTEQMGF LASQNKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-28611510129Heat shock factor protein 1
5d5v_B3e-28611510129Heat shock factor protein 1
5d5v_D3e-28611510129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010943416.10.0heat stress transcription factor A-1 isoform X1
SwissprotQ84T610.0HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A2H3X3N40.0A0A2H3X3N4_PHODC; heat stress transcription factor A-1-like
STRINGXP_008802552.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50973151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-127heat shock factor 3
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]