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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010943415.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | B3 | ||||||||
Protein Properties | Length: 185aa MW: 21109.2 Da PI: 8.0639 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.7 | 5e-14 | 76 | 164 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 v+t+s v + +l++pk+ + ++ ++ + ++++We+++ +++ +r + +GWk+F+ +n+Lk gD + ++l++++ ++ v+++r XP_010943415.1 76 VMTKSQVQAPFQLTIPKSIWMLL--PFAC--VPVVLSYRNKTWEMRYYGDRNLRR--FDSGWKHFAVDNNLKIGDACFLELMDDQHLKFQVQILR 164 78888888888999998887222..2223..346678899*******55777777..8************************9999999**9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.8E-18 | 69 | 164 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.04E-17 | 69 | 164 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.59E-16 | 71 | 164 | No hit | No description |
Pfam | PF02362 | 1.4E-12 | 73 | 165 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.265 | 73 | 166 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.4E-4 | 73 | 166 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MWHSKDALSL AKQKTDHSVC SSNTHRRHCK APVAARSLSS QESTNRANLC LPSDSATIDE 60 KDEIVPLSGK PYFACVMTKS QVQAPFQLTI PKSIWMLLPF ACVPVVLSYR NKTWEMRYYG 120 DRNLRRFDSG WKHFAVDNNL KIGDACFLEL MDDQHLKFQV QILRGDIPRE IVESGCSFDT 180 PIMIE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010910571.2 | 1e-128 | B3 domain-containing protein Os04g0386900 isoform X1 | ||||
Refseq | XP_019701572.1 | 1e-126 | B3 domain-containing protein Os11g0197600 | ||||
TrEMBL | A0A2H3YR23 | 1e-106 | A0A2H3YR23_PHODC; B3 domain-containing protein Os04g0386900-like | ||||
STRING | XP_008802551.1 | 1e-107 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8954 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 9e-09 | B3 family protein |