PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

HD-ZIP

Protein Properties

Length: 259aa MW: 28893.4 Da PI: 8.2934

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010943413.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.9	8.6e-19	119	173	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q Le+ F+++++++ ++++ LAk+l+L rqV vWFqNrRa+ k XP_010943413.1 119 RKKLRLTKDQSALLEDKFKEQSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTK 173 788899***********************************************98 PP
2	HD-ZIP_I/II	120	1.3e-38	119	207	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+k+q++lLE++F+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E d+e+Lkr +++l++en+rL+kev+eL+ + XP_010943413.1 119 RKKLRLTKDQSALLEDKFKEQSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEIDCEVLKRYCETLSDENRRLQKEVHELK-A 207 69*************************************************************************************9.4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.281	115	175	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.67E-17	115	176	IPR009057	Homeodomain-like
SMART	SM00389	1.6E-15	117	179	IPR001356	Homeobox domain
Pfam	PF00046	4.3E-16	119	173	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.2E-17	119	173	IPR009057	Homeodomain-like
CDD	cd00086	2.08E-16	119	176	No hit	No description
PROSITE pattern	PS00027	0	150	173	IPR017970	Homeobox, conserved site
SMART	SM00340	2.7E-21	175	218	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	3.0E-10	175	208	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MDNGDTCDTG LALGLNYNAS GPCSDGHGHR EPIVKLERSS SNMVSVEPSL TLGLSDDTHG 60 SIKSTEEARV ARQSSPHSTV SSFSDGHPSN TKKENSIKSE EAQKFSFRVS DEEEEGSARK 120 KLRLTKDQSA LLEDKFKEQS TLNPKQKQAL AKQLNLRPRQ VEVWFQNRRA RTKLKQTEID 180 CEVLKRYCET LSDENRRLQK EVHELKALRF ASPVYMQFPA TALTMCPSCK KITSTGSEGS 240 KAPEPHSMFM NPFTHSAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	167	175	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010943413.1	0.0	homeobox-leucine zipper protein HAT22
Swissprot	P46604	5e-72	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A2H3YHI9	1e-150	A0A2H3YHI9_PHODC; homeobox-leucine zipper protein HAT22-like
STRING	XP_008798887.1	1e-150	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2055	36	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	2e-74	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]