PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010943354.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 489aa MW: 52798.1 Da PI: 6.6329

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010943354.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.6	1.3e-09	310	358	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq XP_010943354.1 310 NSHSLAERVRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 358 58***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.44E-11	305	362	No hit	No description
SuperFamily	SSF47459	5.76E-17	305	376	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.624	307	357	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.8E-17	308	375	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-6	310	358	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.4E-11	313	363	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MDINEKDKFG LEKTEDHPNY HSLGMPADWP IGNPSMGLVS APPMGSSPCP SVSMVESFAP 60 SLWIPSTHAQ NSGFCDNNVQ SSTAASNSLP IGKPVPRPLR LDMGWNPSDS SPKGSGIFLQ 120 TGTGVLPPGS MMNTFSAPES LSPYSNTPKG VPGAQIQKSE MNTTEVHMDA SLPIDHVSSS 180 RSPMKEPRDK RTSHGAGVSS NESGEPEFSG DGQEEAPNLA SAAVDSSSTG LAAKKRKRPC 240 QDMESDQVQG GGLQPSVETA KNNVDTKQKP EQNSSTMATI KSNGKQAKDS SDAPKEDYVH 300 VRARRGQATN SHSLAERVRR EKISERMKLL QDLVPGCSKV TGKAVMLDEI INYVQSLQRQ 360 VEFLSMKLAA VNPRVDFNVE GLLSKDLLQS RGGPSPAIGF SPDMIHPQLH PSPHGLVQVG 420 MSGIVNPSDA LRRAINAQHT SMNGYKEPVP QIPNAWDEEL HNVMQMNFGT NPPLNTHELN 480 DKPRERFTM

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MDINEKDKFG LEKTEDHPNY HSLGMPADWP IGNPSMGLVS APPMGSSPCP SVSMVESFAP  60
SLWIPSTHAQ NSGFCDNNVQ SSTAASNSLP IGKPVPRPLR LDMGWNPSDS SPKGSGIFLQ  120
TGTGVLPPGS MMNTFSAPES LSPYSNTPKG VPGAQIQKSE MNTTEVHMDA SLPIDHVSSS  180
RSPMKEPRDK RTSHGAGVSS NESGEPEFSG DGQEEAPNLA SAAVDSSSTG LAAKKRKRPC  240
QDMESDQVQG GGLQPSVETA KNNVDTKQKP EQNSSTMATI KSNGKQAKDS SDAPKEDYVH  300
VRARRGQATN SHSLAERVRR EKISERMKLL QDLVPGCSKV TGKAVMLDEI INYVQSLQRQ  360
VEFLSMKLAA VNPRVDFNVE GLLSKDLLQS RGGPSPAIGF SPDMIHPQLH PSPHGLVQVG  420
MSGIVNPSDA LRRAINAQHT SMNGYKEPVP QIPNAWDEEL HNVMQMNFGT NPPLNTHELN  480
DKPRERFTM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010943354.1	0.0	transcription factor bHLH49 isoform X3
TrEMBL	A0A2H3XV10	0.0	A0A2H3XV10_PHODC; transcription factor bHLH49
STRING	XP_008788970.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	2e-93	bHLH family protein