PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010943354.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 489aa MW: 52798.1 Da PI: 6.6329 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.6 | 1.3e-09 | 310 | 358 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq XP_010943354.1 310 NSHSLAERVRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 358 58*************************9....556*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.44E-11 | 305 | 362 | No hit | No description |
SuperFamily | SSF47459 | 5.76E-17 | 305 | 376 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.624 | 307 | 357 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.8E-17 | 308 | 375 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-6 | 310 | 358 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.4E-11 | 313 | 363 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 489 aa Download sequence Send to blast |
MDINEKDKFG LEKTEDHPNY HSLGMPADWP IGNPSMGLVS APPMGSSPCP SVSMVESFAP 60 SLWIPSTHAQ NSGFCDNNVQ SSTAASNSLP IGKPVPRPLR LDMGWNPSDS SPKGSGIFLQ 120 TGTGVLPPGS MMNTFSAPES LSPYSNTPKG VPGAQIQKSE MNTTEVHMDA SLPIDHVSSS 180 RSPMKEPRDK RTSHGAGVSS NESGEPEFSG DGQEEAPNLA SAAVDSSSTG LAAKKRKRPC 240 QDMESDQVQG GGLQPSVETA KNNVDTKQKP EQNSSTMATI KSNGKQAKDS SDAPKEDYVH 300 VRARRGQATN SHSLAERVRR EKISERMKLL QDLVPGCSKV TGKAVMLDEI INYVQSLQRQ 360 VEFLSMKLAA VNPRVDFNVE GLLSKDLLQS RGGPSPAIGF SPDMIHPQLH PSPHGLVQVG 420 MSGIVNPSDA LRRAINAQHT SMNGYKEPVP QIPNAWDEEL HNVMQMNFGT NPPLNTHELN 480 DKPRERFTM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010943354.1 | 0.0 | transcription factor bHLH49 isoform X3 | ||||
TrEMBL | A0A2H3XV10 | 0.0 | A0A2H3XV10_PHODC; transcription factor bHLH49 | ||||
STRING | XP_008788970.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.3 | 2e-93 | bHLH family protein |