PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010943353.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 491aa MW: 52949.1 Da PI: 6.6792

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010943353.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.6	1.3e-09	336	384	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq XP_010943353.1 336 NSHSLAERVRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 384 58***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.46E-11	331	388	No hit	No description
SuperFamily	SSF47459	9.29E-16	331	392	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.624	333	383	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-15	334	392	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-6	336	384	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.8E-11	339	389	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence Send to blast
MDINEKDKFG LEKTEDHPNY HSLGMPADWP IGNPSMGLVS APPMGSSPCP SVSMVESFAP 60 SLWIPSTHAQ NSGFCDNNVQ SSTAASNSLP IGKPVPRPLR LDMGWNPSDS SPKGSGIFLQ 120 TGTGVLPPGL SHFPTDSAFI ERAARFSCFN GGNLGSMMNT FSAPESLSPY SNTPKGVPGA 180 QIQKSEMNTT EVHMDASLPI DHVSSSRSPM KEPRDKRTSH GAGVSSNESG EPEFSGDGQE 240 EAPNLASAAV DSSSTGLAAK KRKRPCQDME SDQVQGGGLQ PSVETAKNNV DTKQKPEQNS 300 STMATIKSNG KQAKDSSDAP KEDYVHVRAR RGQATNSHSL AERVRREKIS ERMKLLQDLV 360 PGCSKVTGKA VMLDEIINYV QSLQRQVELL QSRGGPSPAI GFSPDMIHPQ LHPSPHGLVQ 420 VGMSGIVNPS DALRRAINAQ HTSMNGYKEP VPQIPNAWDE ELHNVMQMNF GTNPPLNTHE 480 LNDKPRERFT M

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence Send to blast

MDINEKDKFG LEKTEDHPNY HSLGMPADWP IGNPSMGLVS APPMGSSPCP SVSMVESFAP  60
SLWIPSTHAQ NSGFCDNNVQ SSTAASNSLP IGKPVPRPLR LDMGWNPSDS SPKGSGIFLQ  120
TGTGVLPPGL SHFPTDSAFI ERAARFSCFN GGNLGSMMNT FSAPESLSPY SNTPKGVPGA  180
QIQKSEMNTT EVHMDASLPI DHVSSSRSPM KEPRDKRTSH GAGVSSNESG EPEFSGDGQE  240
EAPNLASAAV DSSSTGLAAK KRKRPCQDME SDQVQGGGLQ PSVETAKNNV DTKQKPEQNS  300
STMATIKSNG KQAKDSSDAP KEDYVHVRAR RGQATNSHSL AERVRREKIS ERMKLLQDLV  360
PGCSKVTGKA VMLDEIINYV QSLQRQVELL QSRGGPSPAI GFSPDMIHPQ LHPSPHGLVQ  420
VGMSGIVNPS DALRRAINAQ HTSMNGYKEP VPQIPNAWDE ELHNVMQMNF GTNPPLNTHE  480
LNDKPRERFT M

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010943353.1	0.0	transcription factor bHLH49 isoform X2
TrEMBL	A0A2H3XV10	0.0	A0A2H3XV10_PHODC; transcription factor bHLH49
STRING	XP_008788970.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-91	bHLH family protein