PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010943352.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 515aa MW: 55595.2 Da PI: 6.6799 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.5 | 1.4e-09 | 336 | 384 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq XP_010943352.1 336 NSHSLAERVRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 384 58*************************9....556*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.70E-11 | 331 | 388 | No hit | No description |
SuperFamily | SSF47459 | 6.15E-17 | 331 | 402 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.624 | 333 | 383 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-16 | 334 | 401 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-6 | 336 | 384 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.4E-11 | 339 | 389 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 515 aa Download sequence Send to blast |
MDINEKDKFG LEKTEDHPNY HSLGMPADWP IGNPSMGLVS APPMGSSPCP SVSMVESFAP 60 SLWIPSTHAQ NSGFCDNNVQ SSTAASNSLP IGKPVPRPLR LDMGWNPSDS SPKGSGIFLQ 120 TGTGVLPPGL SHFPTDSAFI ERAARFSCFN GGNLGSMMNT FSAPESLSPY SNTPKGVPGA 180 QIQKSEMNTT EVHMDASLPI DHVSSSRSPM KEPRDKRTSH GAGVSSNESG EPEFSGDGQE 240 EAPNLASAAV DSSSTGLAAK KRKRPCQDME SDQVQGGGLQ PSVETAKNNV DTKQKPEQNS 300 STMATIKSNG KQAKDSSDAP KEDYVHVRAR RGQATNSHSL AERVRREKIS ERMKLLQDLV 360 PGCSKVTGKA VMLDEIINYV QSLQRQVEFL SMKLAAVNPR VDFNVEGLLS KDLLQSRGGP 420 SPAIGFSPDM IHPQLHPSPH GLVQVGMSGI VNPSDALRRA INAQHTSMNG YKEPVPQIPN 480 AWDEELHNVM QMNFGTNPPL NTHELNDKPR ERFTM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010943352.1 | 0.0 | transcription factor bHLH49 isoform X1 | ||||
Refseq | XP_029116539.1 | 0.0 | transcription factor bHLH49 isoform X1 | ||||
TrEMBL | A0A2H3XV10 | 0.0 | A0A2H3XV10_PHODC; transcription factor bHLH49 | ||||
STRING | XP_008788970.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2909 | 37 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.3 | 1e-112 | bHLH family protein |