PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010943320.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 526aa MW: 57123.2 Da PI: 6.799 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 56.4 | 5.3e-18 | 240 | 289 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lrel+P++ ++K +Ka+ L +++eYI+ Lq XP_010943320.1 240 RSKHSATEQRRRSKINDRFQILRELIPHS----DQKRDKASFLLEVIEYIRFLQ 289 889*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 3.7E-24 | 235 | 312 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.58E-19 | 236 | 307 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.015 | 238 | 288 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.76E-17 | 240 | 293 | No hit | No description |
Pfam | PF00010 | 2.0E-15 | 240 | 289 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-13 | 244 | 294 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 526 aa Download sequence Send to blast |
MRMELQGKKT THDFLSLYNK DSPFQHQDPR PPSQGCFLKT HDFLKPLEHA GKGRRDEAAS 60 GDIAVACVGP AEVGRAASVE HVLPGGIGTY SITHVSDPSP LAMVKPERGT CRGVDVERKP 120 EPYYANGVAY APQYAAGVPV ALWDESAAKD PGSRGQWQSS FAASGSGSFG SPSASRHHPA 180 PEKPRLMESA SRSSRGFDDE DDDDEEFGKR EGSSSHKELT VKLDGKGKGG DHDQRPNTPR 240 SKHSATEQRR RSKINDRFQI LRELIPHSDQ KRDKASFLLE VIEYIRFLQE KVQKYESSIP 300 GWSQDNTKLM PWVKVYFRSF WKNARNNNES PGDGISDPSQ VMKNGSAPPG YMFSGSDNSI 360 PVAPAMVSTA QNPTDSDMAA GLSYKAMETP TNFANADNMT TQVQPQWLRP SGSADCAVSG 420 EILNEQELTV DEGTISMSSA YSQGLLTTLT QALQSSGIDL SQASISVQIN LGKRAINKRP 480 AATVTTSGAK DHEDPVSANQ TMGHSRAGCS VEESSQAPKR HKADNS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010943320.1 | 0.0 | transcription factor BIM2 isoform X5 | ||||
TrEMBL | A0A2H3XUF1 | 0.0 | A0A2H3XUF1_PHODC; transcription factor BIM2 isoform X5 | ||||
STRING | XP_008788920.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 8e-53 | BES1-interacting Myc-like protein 2 |