PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010943319.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 534aa MW: 57970 Da PI: 6.5139 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.3 | 0.00031 | 240 | 257 | 2 | 19 |
HHHHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsa 19 r +h++ E+rRR++iN++ XP_010943319.1 240 RSKHSATEQRRRSKINDR 257 889*************96 PP | |||||||
2 | HLH | 26.5 | 1.2e-08 | 277 | 310 | 18 | 55 |
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +f+ Lrel+P++ ++K +Ka+ L +++eYI+ Lq XP_010943319.1 277 CRFQILRELIPHS----DQKRDKASFLLEVIEYIRFLQ 310 58**********9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 3.5E-20 | 235 | 332 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.283 | 238 | 309 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.74E-12 | 240 | 314 | No hit | No description |
SMART | SM00353 | 9.7E-4 | 244 | 315 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.22E-10 | 274 | 334 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.1E-6 | 278 | 310 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 534 aa Download sequence Send to blast |
MRMELQGKKT THDFLSLYNK DSPFQHQDPR PPSQGCFLKT HDFLKPLEHA GKGRRDEAAS 60 GDIAVACVGP AEVGRAASVE HVLPGGIGTY SITHVSDPSP LAMVKPERGT CRGVDVERKP 120 EPYYANGVAY APQYAAGVPV ALWDESAAKD PGSRGQWQSS FAASGSGSFG SPSASRHHPA 180 PEKPRLMESA SRSSRGFDDE DDDDEEFGKR EGSSSHKELT VKLDGKGKGG DHDQRPNTPR 240 SKHSATEQRR RSKINDRQVS EHSCQKPRQE WTMNLSCRFQ ILRELIPHSD QKRDKASFLL 300 EVIEYIRFLQ EKVQKYESSI PGWSQDNTKL MPWNNNESPG DGISDPSQVM KNGSAPPGYM 360 FSGSDNSIPV APAMVSTAQN PTDSDMAAGL SYKAMETPTN FANADNMTTQ VQPQWLRPSG 420 SADCAVSGEI LNEQELTVDE GTISMSSAYS QGLLTTLTQA LQSSGIDLSQ ASISVQINLG 480 KRAINKRPAA TVTTSGAKDH EDPVSANQTM GHSRAGCSVE ESSQAPKRHK ADNS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029116533.1 | 0.0 | transcription factor BIM2 isoform X4 | ||||
TrEMBL | A0A2H3ZNZ2 | 0.0 | A0A2H3ZNZ2_PHODC; transcription factor BIM2 isoform X3 | ||||
STRING | XP_008788920.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 3e-51 | BES1-interacting Myc-like protein 2 |