PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_010943286.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

NF-YB

Protein Properties

Length: 336aa MW: 36396.7 Da PI: 9.2087

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010943286.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	153	5.4e-48	145	240	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 r q++f+Pianv+rim+ +lP +akis+dak t+ ecvse+isf+t+ea+++cqre+rkti+++d++wa+++lGf+dyv pl+ yl++yre+eg+ XP_010943286.1 145 RGQEHFMPIANVIRIMRMILPMHAKISDDAKVTILECVSEYISFITGEANQRCQREQRKTIAAEDVIWAMGKLGFDDYVGPLRRYLQRYREIEGD 239 6799*****************************************************************************************99 PP NF-YB 97 k 97 + XP_010943286.1 240 H 240 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	6.6E-43	142	241	IPR009072	Histone-fold
SuperFamily	SSF47113	2.26E-34	147	245	IPR009072	Histone-fold
Pfam	PF00808	1.3E-22	150	214	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	5.0E-13	178	196	No hit	No description
PRINTS	PR00615	5.0E-13	197	215	No hit	No description
PRINTS	PR00615	5.0E-13	216	234	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MAGGGDANPV FPRLPRISSA FFGQTTFPWP HTRKKSAAHR LTANPLHENR PPALMQTSQK 60 PRVLVAQDTR AALPTPLFST FLKLYSFALT ELFWLAGTAW PFADGINASQ TGPAGVLQAG 120 SAAGTTVSPG GAATVPAAQP PVNLRGQEHF MPIANVIRIM RMILPMHAKI SDDAKVTILE 180 CVSEYISFIT GEANQRCQRE QRKTIAAEDV IWAMGKLGFD DYVGPLRRYL QRYREIEGDH 240 RIGLQGGDHF PIVKQRRHPQ NTAAPSVCSQ PPLMCSSMPR LLPSSSLMMP PTAPPLRFNH 300 LCGEGSGSGY FLGMYGGDDG AGASDSQAPP MADFFP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	7e-50	142	235	4	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010943286.1	0.0	nuclear transcription factor Y subunit B-8-like isoform X1
TrEMBL	A0A2H3YH18	1e-102	A0A2H3YH18_PHODC; nuclear transcription factor Y subunit B-6-like
STRING	XP_008798409.1	1e-103	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP201	38	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	2e-52	nuclear factor Y, subunit B6