PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010943094.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HSF
Protein Properties Length: 341aa    MW: 37458.9 Da    PI: 8.682
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010943094.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.23.6e-35231162103
                     HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
    HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                     Fl+k+y++++d+++++++sw  ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  e+         weF+++ F+kg+k+ll+
  XP_010943094.1  23 FLTKTYQLVDDPSTDHIVSWGdDRVSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKVVPER---------WEFANEFFRKGEKHLLC 108
                     9********************6667*****************************************999.........***************** PP

                     XXXXXXXX CS
    HSF_DNA-bind  96 kikrkkse 103
                     +i+r+k++
  XP_010943094.1 109 EIHRRKTS 116
                     *****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.3E-3614108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.3E-5919113IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.62E-3220113IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.2E-202346IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.1E-3023113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-206274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-207587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MERCWESGGG GAVEAHKAVP APFLTKTYQL VDDPSTDHIV SWGDDRVSTF VVWRPPEFAR  60
DLLPNYFKHN NFSSFVRQLN TYGFRKVVPE RWEFANEFFR KGEKHLLCEI HRRKTSNSAA  120
PSPSSPPLFP PHHLPLYHHF PDDHHLVGPP QWRDSPSPRL LALGNGGNGG GAPPPPPATA  180
AALVEENERL RRNNAALLSE LSHMRKLYND IIYFVQNHVR PVAPSSAAST LLLSATNAGV  240
AGSFYPHRKG GLNSGGSTTS SSSLTIAEEP SPPLDNNTNN NNGESSSSRP KLFGVPLSER  300
STSTHKRGLH LDAPTSPSTK PRLVLEEDDL SLNLMPPSPT R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-211911817125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010943094.10.0heat stress transcription factor B-4c
SwissprotQ9C6352e-99HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A2H3X8G60.0A0A2H3X8G6_PHODC; heat stress transcription factor B-4c-like
STRINGXP_008779895.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-63heat shock transcription factor B4