PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010943066.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HSF
Protein Properties Length: 324aa    MW: 36017.7 Da    PI: 10.0931
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010943066.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.31.4e-34321232102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+++++ed++++e+isw eng+sfvv+++ efa+++Lp +Fkh+nf+SFvRQLn+YgF+kv  ++         weF++++F++g+++ll++
  XP_010943066.1  32 FLTKTHQMVEDRRTDEVISWGENGRSFVVWKPVEFARDLLPVHFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANENFRRGERRLLCD 117
                     9*****************************************************************99.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  XP_010943066.1 118 IRRRKA 123
                     ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.5E-5628121IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.17E-3429121IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.6E-3729121IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.7E-193255IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.3E-3132121IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.7E-197082IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407195IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.7E-198395IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MAAPKGGRQN NNNNNSSNNG GNGRSLGGPA PFLTKTHQMV EDRRTDEVIS WGENGRSFVV  60
WKPVEFARDL LPVHFKHNNF SSFVRQLNTY GFRKVVPDRW EFANENFRRG ERRLLCDIRR  120
RKAAPPQALP AGKSNAGHGN HPPLPSSTSN SGEVHSSSST CSPPPPPPPP PTLPSQQLLD  180
LTNENEKLKK DNKMLSSELA QAKQHCKELL GFLSKFMDVG ELNIAPLMQE NGLTEASIWR  240
DETKKKKDVE EEMGNKEEGL KLFGVLLKRF EGEESKKRRR EKRGRCDEGG EGCGAGEKPM  300
KMGFVAPWMG TSTPVQKGSS KVCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-203212129129Heat shock factor protein 1
5d5v_B1e-203212129129Heat shock factor protein 1
5d5v_D1e-203212129129Heat shock factor protein 1
5d8k_B7e-21321245108Heat shock factor protein 2
5d8l_B7e-21321245108Heat shock factor protein 2
5d8l_D7e-21321245108Heat shock factor protein 2
5d8l_F7e-21321245108Heat shock factor protein 2
5d8l_H7e-21321245108Heat shock factor protein 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275282KKRRREKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010943066.10.0heat stress transcription factor B-1
SwissprotQ67TP93e-83HSFB1_ORYSJ; Heat stress transcription factor B-1
TrEMBLA0A2H3Z4L71e-149A0A2H3Z4L7_PHODC; heat stress transcription factor B-1-like
STRINGXP_008808108.11e-150(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.12e-56heat shock factor 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Grand X, et al.
    Identification of positive and negative regulators of disease resistance to rice blast fungus using constitutive gene expression patterns.
    Plant Biotechnol. J., 2012. 10(7): p. 840-50
    [PMID:22607456]